Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03842 ATGAAGTCCTCAAATATTCTTGTGATCTTAACCATTCTCTCAACATGTTGTTTCATTATTTGCTTAGCACAAAACTCCCCTGAAGACTACCTAGACGCGCACAATAAGGCGCGTGCCGAGGTTGGCGTCCCACCACTTTGTTGGGACGAAACCCTTGAAGCCTATGCCAAGAACTATTCTGAATCAAAGATCGAAAGCTGCGAAATGGTGCACTCCGGTGGGCCTTATGGCGAGAATCTTGCGGAGGGTTCCGACCCTGAAATGACTGCTACAGATGCAATTAATTTTTGGCTAGATGAGAAGAAATACTACGACAACGCAACCAACTCGTGTATTCAAGATGAGTGTAGGCATTATACACAAGTTGTTTGGCATGATACTCTTCATCTTGGTTGTGCTAAAGCACATTGTACGAAAGGATGGACGTTTATCATTTGTAGCTATGATCCACCGGGAAATTATGTAGGCGATCGACCTTACTAG 483 0.441 MKSSNILVILTILSTCCFIICLAQNSPEDYLDAHNKARAEVGVPPLCWDETLEAYAKNYSESKIESCEMVHSGGPYGENLAEGSDPEMTATDAINFWLDEKKYYDNATNSCIQDECRHYTQVVWHDTLHLGCAKAHCTKGWTFIICSYDPPGNYVGDRPY 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03842 160 SMART SCP_3 25 156 IPR014044 -
Trre7g03842 160 Pfam Cysteine-rich secretory protein family 31 148 IPR014044 -
Trre7g03842 160 ProSitePatterns CRISP family signature 2. 143 154 IPR018244 GO:0005576
Trre7g03842 160 Gene3D CAP 22 160 IPR035940 -
Trre7g03842 160 SUPERFAMILY PR-1-like 11 160 IPR035940 -
Trre7g03842 160 ProSitePatterns CRISP family signature 1. 117 127 IPR018244 GO:0005576
Trre7g03842 160 PRINTS Allergen V5/Tpx-1 family signature 93 106 IPR001283 -
Trre7g03842 160 PRINTS Allergen V5/Tpx-1 family signature 116 132 IPR001283 -
Trre7g03842 160 PRINTS Allergen V5/Tpx-1 family signature 46 64 IPR001283 -
Trre7g03842 160 PRINTS Allergen V5/Tpx-1 family signature 143 156 IPR001283 -
Trre7g03842 160 FunFam Putative pathogenesis-related protein 1 24 160 - -
Trre7g03842 160 CDD CAP_PR-1 27 160 - -
Trre7g03842 160 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 29 157 IPR001283 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03842 Trre-Chr7 46583295 46583777 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03842 K13449 - vvi:100265141 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g03842 7 46583295 46583777 Trre7g03842 7 46583295 46583777 ECH
Trre7g03842 7 46583295 46583777 Trre3g00316 3 2095843 2096340 PCT