Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g00316 ATGGGTTCATTTTCTCTATTGTGTGTGTTAGGCTTAATACTCATTATTAAGGGTAGTAATGTTGCACATGCCCAAGACTCACCACTAGACTATGTTAAAGCCCACAACAAAGCAAGATCAGCGGTTCAAACCAATGTTAAACTTCCAAACCTTGTTTGGGACAACAAAGTTGCTGCTTATGCACAAAATTATGCTAATCAACGCAAGGATTGTCAGCTGGTCCACTCCGAAACTGAGCGATACGGAGAGAATATCGCGGAGAGCAGCGGTGACATGAATGGCACAGAAGCAGTGAAGTTGTGGGTTGATGAAAAACCATACTATGATTATAATAGTAACTCATGTGTTAATGGTGAAATGTGTGGCCATTATACTCAAGTTGTTTGGAGAAAATCACTACGTATTGGATGTGCTAAAGTCAAATGTGACAATGGAGGCACATTTATCACTTGCAACTATGACCCTCCTGGCAATTATGTTGGTGAAAGACCATACTAA 498 0.4036 MGSFSLLCVLGLILIIKGSNVAHAQDSPLDYVKAHNKARSAVQTNVKLPNLVWDNKVAAYAQNYANQRKDCQLVHSETERYGENIAESSGDMNGTEAVKLWVDEKPYYDYNSNSCVNGEMCGHYTQVVWRKSLRIGCAKVKCDNGGTFITCNYDPPGNYVGERPY 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g00316 165 PRINTS Allergen V5/Tpx-1 family signature 51 69 IPR001283 -
Trre3g00316 165 PRINTS Allergen V5/Tpx-1 family signature 121 137 IPR001283 -
Trre3g00316 165 PRINTS Allergen V5/Tpx-1 family signature 148 161 IPR001283 -
Trre3g00316 165 PRINTS Allergen V5/Tpx-1 family signature 97 110 IPR001283 -
Trre3g00316 165 SUPERFAMILY PR-1-like 19 165 IPR035940 -
Trre3g00316 165 ProSitePatterns CRISP family signature 2. 148 159 IPR018244 GO:0005576
Trre3g00316 165 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 30 162 IPR001283 -
Trre3g00316 165 SMART SCP_3 26 161 IPR014044 -
Trre3g00316 165 Pfam Cysteine-rich secretory protein family 33 153 IPR014044 -
Trre3g00316 165 CDD CAP_PR-1 28 165 - -
Trre3g00316 165 PRINTS Venom allergen 5 signature 120 139 IPR002413 -
Trre3g00316 165 PRINTS Venom allergen 5 signature 51 69 IPR002413 -
Trre3g00316 165 FunFam Putative pathogenesis-related protein 1 25 165 - -
Trre3g00316 165 ProSitePatterns CRISP family signature 1. 122 132 IPR018244 GO:0005576
Trre3g00316 165 Gene3D CAP 28 165 IPR035940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g00316 Trre-Chr3 2095843 2096340 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g00316 K13449 - gmx:100805116 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g00316 3 2095843 2096340 Trre3g00316 3 2095843 2096340 ECH
Trre7g03842 7 46583295 46583777 Trre3g00316 3 2095843 2096340 PCT