Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03274 ATGGGTCAAGGTCTTAGTTGCAGAGGGAGTAATGAACATGGTCTCTTTCGTGCTGTCCAACATGGTGACCTTCATACTGTTTCTACTTTGTTAAAGATACATCCTTCTCTTATTCATCGTACTACTGTTTATGACCACCATTCTCCTCTTCATATTGCTGCTGCTAATGGTCAGATCCAGGTTTTATCTAGACTTCTAGATGGATCTGCAAATCCAGATGTCTTGAATCGCCAAAAGCAGACTCCACTTATGTTGGCAGCAATGCATGGAAAAATTGATTGTGTGGAAAAGCTACTTGAAGCTGGTGCTAATGTATTGATGTTTGATGTGTGTCATGGAAGAACCTGTTTGCACTATGCTGCTTATTATGGTCATTCTTCTTGCCTTAAAGCAATACTTTCTGCTGCTCAATCTAGTCCCGTGGCTGCTTCTTGGGGGTTTTCACGATTTGTCAATATTAGAGATGGTAGGGGTGCTACACCGTTGCATTTGGCAGCTCGTCAAAGACGGTCTGAATGCGTGCATACTCTGTTGTGTAGTGGAGCTCTTGTTTGTGCTTCAACTAGCAGATATGGCTGTCCTGGGAGCACTCCTCTTCATCTAGCAGCTAAAGGAGGCTCTCTAGATTGCATCCGTGAACTATTAGCATGGGGTGCAGATCGTCTTCAACGTGATGCATCTGGGCGGATACCGTATGTGGTTGCTCTGAAGCACAAACACGGAGCATGTGCAGCACTGTTAAATATTGCATCTGCACAGCCTCTTGTGTGGCCATCATCTTTGAAGATAATCAGTGAGCTTAATCCGGAGGCCAAATTATTATTAGAGCAGGCCTTGATGGACGCGAATAAGGAAAGGGAGAAAAATATATTGAAAGGCAGTCCTTACTCTCTTCCATCTCCAGCACACTCTGATCAGATGGATGACAATATCTCTGAGGTTAGTGAGACGGAATTATGCTGCATCTGCTTCGAGCAGGTGTGTACAATTGAAGTCCAGGACTGTGGCCACCAAATGTGTGCACAATGCACACTAACACTCTGTTGTCACAACAAGCCAAACACATCAACTTCTTGTCCGACACCACCCGTTTGTCCATTCTGTCGAAGCGCCATATCTAAACTGGTGGTTATCAAGATAGAAACTCACGAAGACATCGATCAAGACGGCACCACCACCGATACCACTTGTTTTAAGCCAAGCAAGTCAAGGAAATTCCGTAACATGAATGAGGGTAGCAGCAGCAGTTTCAAAGGATTATCCAATGTAAATTCATTCGGAAAAATGAGCGGCCGTAGTTCCGGTATGATTGCTTCCGAAAATGAGTGTATTGATGATAAGCCACAATGA 1350 0.4422 MGQGLSCRGSNEHGLFRAVQHGDLHTVSTLLKIHPSLIHRTTVYDHHSPLHIAAANGQIQVLSRLLDGSANPDVLNRQKQTPLMLAAMHGKIDCVEKLLEAGANVLMFDVCHGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFSRFVNIRDGRGATPLHLAARQRRSECVHTLLCSGALVCASTSRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHKHGACAALLNIASAQPLVWPSSLKIISELNPEAKLLLEQALMDANKEREKNILKGSPYSLPSPAHSDQMDDNISEVSETELCCICFEQVCTIEVQDCGHQMCAQCTLTLCCHNKPNTSTSCPTPPVCPFCRSAISKLVVIKIETHEDIDQDGTTTDTTCFKPSKSRKFRNMNEGSSSSFKGLSNVNSFGKMSGRSSGMIASENECIDDKPQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03274 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 388 IPR013083 -
Trre7g03274 449 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Trre7g03274 449 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Trre7g03274 449 MobiDBLite consensus disorder prediction 429 449 - -
Trre7g03274 449 SMART ANK_2a 112 142 IPR002110 GO:0005515
Trre7g03274 449 SMART ANK_2a 10 40 IPR002110 GO:0005515
Trre7g03274 449 SMART ANK_2a 78 107 IPR002110 GO:0005515
Trre7g03274 449 SMART ANK_2a 157 186 IPR002110 GO:0005515
Trre7g03274 449 SMART ANK_2a 45 74 IPR002110 GO:0005515
Trre7g03274 449 SMART ANK_2a 194 223 IPR002110 GO:0005515
Trre7g03274 449 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Trre7g03274 449 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Trre7g03274 449 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Trre7g03274 449 Pfam Ankyrin repeats (3 copies) 112 182 IPR002110 GO:0005515
Trre7g03274 449 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Trre7g03274 449 Pfam Ankyrin repeats (many copies) 195 232 IPR002110 GO:0005515
Trre7g03274 449 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Trre7g03274 449 SUPERFAMILY RING/U-box 313 372 - -
Trre7g03274 449 Gene3D - 9 143 IPR036770 -
Trre7g03274 449 Gene3D - 144 197 IPR036770 -
Trre7g03274 449 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Trre7g03274 449 PANTHER ANKYRIN REPEAT CONTAINING 151 267 - -
Trre7g03274 449 Gene3D - 198 252 IPR036770 -
Trre7g03274 449 SUPERFAMILY Ankyrin repeat 15 247 IPR036770 -
Trre7g03274 449 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Trre7g03274 449 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03274 Trre-Chr7 31369482 31372551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g03274 12 285 Miscellaneous Gene Families AT5G60070 28.470 7.12e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03274 - - gmx:100800611 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04411 11 56484953 56487347 Trre7g03274 7 31369482 31372551 PCT