Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04411 ATGGGTCAAAACCTTAGTTGCAGAGGTAACAATGATCATGGTCTCTTCACTGCTGTTCAACAAGGTAATCTTCAAATTGTCACAACTCTGTTACAACAAGACCCTTCTCTTTTTCATCAAACAACTCTTTATGATCGTTATTCACCTCTTCATATTGCTGCTGCTAATGGCCAGATCGAGATTCTTTCAAGGCTTTTACATGGATCTGTTAACCCAGATATTTTAAATCGACAAAAACAGACTCCTCTTATGTTGGCTGCAATGCATGGAAGGATTGCTTGTGTGGAGAAGCTCCTTGAAGCTGGTGCTAATGTTTTGATGTTTGATACTGTTAATGGAAGAACTTGCTTACACTATGCTGCTTATTATGGCCATTTTTCTTGCCTTAAAGCTATTCTTTCTTCTGCTCAATCTAGTCATGTGGCTGCTTCTTGGGGATTTGTTCGGTTTGTGAATATTAGAGACGGAAAAGGTGCGACGCCTTTGCACTTAGCAGCTCGTCAAAGACGGGCGGAATGTGTACATGTTTTATTAGATAGTGGAGCTCTTGTTTGTGCTTCAACCGGTAGATACGGATATCCTGGTAGCACTCCCCTTCATCTAGCTGCTAGAGGAGGATCTCTTGATTGCATCCGAGAATTGTTGGCGTGGGGTGCCGATCGTCTTCAGCGTGATTCATCTGGGCGGATACCATATACGGTTGCTATGAAACACAGACACAGACCATGTGCGTCGTTGCTAAATCCTACATCTGCTGAGCCTCTTGTTTGGCCGTCTCCACTGAAGTTCATCAGCGAACTTAATGCGGATGCCAAAGCCTTGTTAGAACAAGCTTTGATGGACGCAAACAAAGAAAGGGAACAAAATATATTGAAGGGAAAAGTTTACTCTCTTCCATCTCCATCACAGTCTGATTGTGTAGATGACAACATCTCCGAGATTAGTGAGTCAGAGTTATGCTGCATCTGCTTTGAGCAAGTATGCACAATTGAAGTTCAAAATTGTGGTCACCAAATGTGTGCACAATGCACATTAGCCCTATGTTGCTACAACAAACCGAATCCGACAACTGCTTCTATTACTTCACCAGTCTGTCCATTTTGTCGAAGCAACATATCTAGACTTATGGTTGTCATGAAAATAGAAAATCACGACGAAACTGATCAGGACAATGTTGATGTCAATAGTTCAAAGATAAACAAGTCGAGGAAACTCCGAAACTTAAATGAAAGTGGTAGTAGCAGCTTCAAAGGATTATCTAGCGTTTCGTTCGGAAAGTTAGGTGGCCGAAGCTCCGGAAGAGTTGCTGCTGAATGGATTGATAAACAGTAA 1332 0.4204 MGQNLSCRGNNDHGLFTAVQQGNLQIVTTLLQQDPSLFHQTTLYDRYSPLHIAAANGQIEILSRLLHGSVNPDILNRQKQTPLMLAAMHGRIACVEKLLEAGANVLMFDTVNGRTCLHYAAYYGHFSCLKAILSSAQSSHVAASWGFVRFVNIRDGKGATPLHLAARQRRAECVHVLLDSGALVCASTGRYGYPGSTPLHLAARGGSLDCIRELLAWGADRLQRDSSGRIPYTVAMKHRHRPCASLLNPTSAEPLVWPSPLKFISELNADAKALLEQALMDANKEREQNILKGKVYSLPSPSQSDCVDDNISEISESELCCICFEQVCTIEVQNCGHQMCAQCTLALCCYNKPNPTTASITSPVCPFCRSNISRLMVVMKIENHDETDQDNVDVNSSKINKSRKLRNLNESGSSSFKGLSSVSFGKLGGRSSGRVAAEWIDKQ 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04411 443 SUPERFAMILY Ankyrin repeat 11 250 IPR036770 -
Trre11g04411 443 MobiDBLite consensus disorder prediction 408 432 - -
Trre11g04411 443 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Trre11g04411 443 Pfam Ankyrin repeats (many copies) 195 235 IPR002110 GO:0005515
Trre11g04411 443 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Trre11g04411 443 PANTHER HOMEOBOX PROTEIN WARIAI 21 382 - -
Trre11g04411 443 Pfam Ankyrin repeat 158 185 IPR002110 GO:0005515
Trre11g04411 443 Pfam Ankyrin repeat 112 136 IPR002110 GO:0005515
Trre11g04411 443 ProSiteProfiles Ankyrin repeat profile. 112 144 IPR002110 GO:0005515
Trre11g04411 443 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Trre11g04411 443 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Trre11g04411 443 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Trre11g04411 443 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Trre11g04411 443 MobiDBLite consensus disorder prediction 408 427 - -
Trre11g04411 443 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Trre11g04411 443 SUPERFAMILY RING/U-box 315 375 - -
Trre11g04411 443 Coils Coil 268 288 - -
Trre11g04411 443 SMART ANK_2a 194 223 IPR002110 GO:0005515
Trre11g04411 443 SMART ANK_2a 10 39 IPR002110 GO:0005515
Trre11g04411 443 SMART ANK_2a 227 256 IPR002110 GO:0005515
Trre11g04411 443 SMART ANK_2a 45 74 IPR002110 GO:0005515
Trre11g04411 443 SMART ANK_2a 112 141 IPR002110 GO:0005515
Trre11g04411 443 SMART ANK_2a 78 107 IPR002110 GO:0005515
Trre11g04411 443 SMART ANK_2a 157 186 IPR002110 GO:0005515
Trre11g04411 443 Gene3D - 198 251 IPR036770 -
Trre11g04411 443 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Trre11g04411 443 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Trre11g04411 443 Gene3D - 151 197 IPR036770 -
Trre11g04411 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 388 IPR013083 -
Trre11g04411 443 Gene3D - 7 150 IPR036770 -
Trre11g04411 443 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04411 Trre-Chr11 56484953 56487347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04411 14 225 Miscellaneous Gene Families AT3G12360 31.481 7.10e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04411 - - gmx:100786708 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04411 11 56484953 56487347 Trre11g04411 11 56484953 56487347 ECH
Trre11g04411 11 56484953 56487347 Trre7g03274 7 31369482 31372551 PCT