Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03055 ATGTCTCATTCCTTTCACAAATCCCCTCTCTCCAACACAACCACCACGCCTTCCGTCAACTCCAACGGAGTTAATGTCTACGTCAGAAGAAACAAAAGACCTAAAGGAATCACCACCACCACCACCACCACCAATCCTCACAAAGTCAGAAAGTTTGGTCTGCCTGATATTGAAGACTTTGCATACAAAGGACCAAATGAATTGACTCAGTGCATAAAATCAGAAGTGAACTCAGATGTGACTCTAACTGAAAATGAAATTGTTTCTACTACACATACCATTGAATCACCTGCACACTGGGAAGAGACGCTTGAAGGTATTCGCAAAATGAGATGTTCTGCAGATGCACCAGTAGACACTATGGGATGTGAGAAAGCTGGTTCTACACTACCTCCTAAGGAAAGAAGATTTGCTGTCCTGGTATCTTCTCTTTTATCAAGCCAAACCAAGGATCATGTTAATCATGGAGCAATTCAACGTCTTCTTCAAAATGATCTACTTACTCCTGATGCAATCAACAATGCTGAAGAAGAAACTATCAAAAAGTTGATTTACCCCGTTGGGTTTTATACAAGAAAAGCCACTAACTTGAAAAAAATTGCAACTATTTGTCTCATTAAGTATGGCGGTGACATACCTACCACACTTGAGCAACTACTCTTACTTCCAGGCATAGGTCCTAAGATGGCTCATTTGGTTATGAACGTTGCGTGGAACAATGTTCAAGGGATCTGTGTAGACACTCATGTTCATCGCATTTGCAATCGGCTAGGTTGGGTGTCAAGATTGGGCACGAAACAGAAAACTTTGACACCTGAAGAGACAAGAGTGTCACTGCAAGGGTGGCTTCCAAGGGAAGAATGGGATCCAATAAATCCTCTATTGGTAGGATTTGGACAGACAATTTGTACACCTCTAAGACCTCGTTGCGGAGAATGTGGGATAACTGACTTGTGTCCATCAGCATTCATGGAGGCCTCAGATTCCAGTCCAGTTTCGAAGTCTACAAAGCCCCGAAGGAAAAAGAAGCTTTAA 1035 0.4232 MSHSFHKSPLSNTTTTPSVNSNGVNVYVRRNKRPKGITTTTTTTNPHKVRKFGLPDIEDFAYKGPNELTQCIKSEVNSDVTLTENEIVSTTHTIESPAHWEETLEGIRKMRCSADAPVDTMGCEKAGSTLPPKERRFAVLVSSLLSSQTKDHVNHGAIQRLLQNDLLTPDAINNAEEETIKKLIYPVGFYTRKATNLKKIATICLIKYGGDIPTTLEQLLLLPGIGPKMAHLVMNVAWNNVQGICVDTHVHRICNRLGWVSRLGTKQKTLTPEETRVSLQGWLPREEWDPINPLLVGFGQTICTPLRPRCGECGITDLCPSAFMEASDSSPVSKSTKPRRKKKL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03055 344 Gene3D Hypothetical protein; domain 2 132 241 - -
Trre7g03055 344 ProSitePatterns Endonuclease III family signature. 210 239 IPR004036 -
Trre7g03055 344 FunFam Endonuclease III-like protein 1 132 236 - -
Trre7g03055 344 Pfam Helix-hairpin-helix motif 207 235 IPR000445 GO:0003677
Trre7g03055 344 Pfam HhH-GPD superfamily base excision DNA repair protein 141 269 IPR003265 GO:0006284
Trre7g03055 344 MobiDBLite consensus disorder prediction 1 24 - -
Trre7g03055 344 MobiDBLite consensus disorder prediction 325 344 - -
Trre7g03055 344 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 303 319 IPR004035 -
Trre7g03055 344 SUPERFAMILY DNA-glycosylase 108 329 IPR011257 GO:0003824|GO:0006281
Trre7g03055 344 SMART ccc3 302 322 IPR003651 GO:0051539
Trre7g03055 344 Gene3D - 242 319 IPR023170 -
Trre7g03055 344 FunFam Endonuclease III homolog 235 325 - -
Trre7g03055 344 CDD ENDO3c 137 299 IPR003265 GO:0006284
Trre7g03055 344 Hamap Endonuclease III-like protein 1 [NTHL1]. 96 325 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Trre7g03055 344 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 29 337 - -
Trre7g03055 344 SMART endo3end 145 301 IPR003265 GO:0006284
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03055 Trre-Chr7 27806485 27811763 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03055 K10773 - gmx:100818398 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04514 11 57370047 57372708 Trre7g03055 7 27806485 27811763 PCT