Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04514 ATGTTGGTGCGAATCACTGTCTCCTCCTCCTCCTTCTTCTTCTCCAAAACCAATCCATACCAAGTGTCCCAATTTCATGTCTCTACGAGGAACAACACACCCACAAACACTTTACAACTTCAACTAAACAAGCAGATAGACCAGTTTCAAGACAAAAAAAAGTTTGGTTTGAGTTTTACTAAGATTGAAGGATCTGCATACACTAAAACAGTTGAATTGGGTCAATTCTATGAATGTCCTGCCAATTGGGAAAATGTCCTTGAAGGGATTCGTAAAATGAGTTATTCCGAAGATGACACCACGCGAGATTGGAAAGATGATGATGATGATATTCGACCTCCTAAGGAAAGAAGATTTGCTGTCTTGGCATCTTCTCTTTTATCGAGCCAAACTAAGGAGCATGTTACTCGTGGAGCAACTGAACGTCTTCGTCAAAACGGACTTATTACTGCTGATGCAATCAACACAGCTGATGAAGAAATCATCAAAAAGTTGATTTACCCTGTTGGGTTTTATATAAGAAAAGCCAGTAACTTGAAGAAAATTGCTCATATTTGTCTCACGAAGTATGATGGAGACATACCTAACTCAATTGAGGACCTACTCTCGCTTCCAGGCGTAGGTCCTAAGATTGCTCATTTGGTCATGATTATTGCATGGAACAATGTCCAAGGGATATGTGTAGATACTCATGTCCACCGCATCTGCAATCGTCTTGGATGGGTTTCGAGATCAGGCACAAAACAGAGAACTTCAATACCAGAAGAAACAAGAAAGGCGCTGGAACGGTGGCTTCCGAGGGAAGAATGGGTTCCAATAAATCCTCTTTTGGTAGGATTTGGAAGGACGATTTGTACTCCTTTACGGCCTCGCTGCGGAGAGTGTGGTGTAAGCAGGTTCTGCCCATCAGCATTCAAGGAGACTTCAAGTTCATCTTCCAGGTTTGATGATATGTATACATAG 963 0.4174 MLVRITVSSSSFFFSKTNPYQVSQFHVSTRNNTPTNTLQLQLNKQIDQFQDKKKFGLSFTKIEGSAYTKTVELGQFYECPANWENVLEGIRKMSYSEDDTTRDWKDDDDDIRPPKERRFAVLASSLLSSQTKEHVTRGATERLRQNGLITADAINTADEEIIKKLIYPVGFYIRKASNLKKIAHICLTKYDGDIPNSIEDLLSLPGVGPKIAHLVMIIAWNNVQGICVDTHVHRICNRLGWVSRSGTKQRTSIPEETRKALERWLPREEWVPINPLLVGFGRTICTPLRPRCGECGVSRFCPSAFKETSSSSSRFDDMYT 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04514 320 Gene3D Hypothetical protein; domain 2 103 217 - -
Trre11g04514 320 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 24 313 - -
Trre11g04514 320 Pfam Helix-hairpin-helix motif 189 216 IPR000445 GO:0003677
Trre11g04514 320 Hamap Endonuclease III-like protein 1 [NTHL1]. 79 307 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Trre11g04514 320 SMART endo3end 127 283 IPR003265 GO:0006284
Trre11g04514 320 FunFam Endonuclease III-like protein 1 114 218 - -
Trre11g04514 320 CDD ENDO3c 119 281 IPR003265 GO:0006284
Trre11g04514 320 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 285 301 IPR004035 -
Trre11g04514 320 Pfam HhH-GPD superfamily base excision DNA repair protein 124 259 IPR003265 GO:0006284
Trre11g04514 320 Gene3D - 218 307 IPR023170 -
Trre11g04514 320 ProSitePatterns Endonuclease III family signature. 192 221 IPR004036 -
Trre11g04514 320 SUPERFAMILY DNA-glycosylase 111 308 IPR011257 GO:0003824|GO:0006281
Trre11g04514 320 FunFam Endonuclease III homolog 217 307 - -
Trre11g04514 320 SMART ccc3 284 304 IPR003651 GO:0051539
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04514 Trre-Chr11 57370047 57372708 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04514 K10773 - zju:107421847 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04514 11 57370047 57372708 Trre11g04514 11 57370047 57372708 ECH
Trre11g04514 11 57370047 57372708 Trre7g03055 7 27806485 27811763 PCT