Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g03001 ATGAACAAACCTCCACGAGATGATCATGAACGTAACAACACTGTTACTACTACTACTACTACTTCTTCTACTCTCGACTCTAGATTCAGCCAGACTCTCAAAAACGTTCAAGGGTTACTTAAAGGTCGTAGCATGCCCGGTAAAGTATTGATGAGCAGAAGGTCAGAACCTTCTGATAACTCTAACTCTAAGGTATCCTCAACATATTTCAAAAGGAGTTTCTCACACAATGATGCTGGCACAAGTGATCATATATCTGGTGCAGTAGAGGGGGAAGTTCAGAGTACAAGTAAACCAGTCAGTACTGCTAGTGTTAGTAGGTTAAAAATATCAACCTCCCTTGGGGAAAGGGAGAACTTATCTGACGACTTCCGCAAGTATACCATGGGCGCTAGAGCTACTGATTCGGCAAAAGTTACAAAGTTCACTAAGGTGCTTTCTGGAACAGTGGTTATATTAGACAAATTGCGTGAATTAGCTTGGAGTGGTGTTCCAGACTACATGCGTCCTAAAGTGTGGAGACTGCTCTTGGGATATGAACCACCTAATTCAGATAGGAAGGAGGGAGTTTTGAGAAGGAAGCGTGGAGAGTATCTTGATTGTATTTCTCAGTATTATGATATTCCTGATTCAGAACGTTCGGATGATGAGGTCAACATGCTTCGCCAGATTGCCGTTGATTGTCCAAGAACTGTACCCGATGTTCCTTTCTTCCAGCAAGAGCAAGTTCAGAAGTCATTGGAACGTATTCTCTATGCGTGGGCCATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACACCATTTTTAGTTGTTTTTATATCAGAATACTTGGAAGGGAGTATAGATGATTGGTCCATGTCTGATTTATCTTCAGACAAAATCTCTAATATAGAGGCTGACTGCTACTGGTGTTTGACAAAGTTGCTTGATGGTATGCAAGACCATTACACATTTGCTCAACCTGGAATTCAGAGGCTTGTTTTTAAATTGAAGGAATTGGTCAGGAGGATCGATGAGCCCGTTACACAACATATAGAGGATCAGGGACTTGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTGATCCGTGAGATACCCTTCGATCTCATCACACGCCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATTTGCTAGTTTCCTTCTAACGTGGTCAGACAAGCTGCGGAGCTTGGAATTCCAGGAGTTGGTAATGTTCCTTCAACACCTTCCAACTCAAAAATGGACTCACCAGGACCTCGAGATGGTGCTTTCCCGAGCATTTATGTGGCATAGCATGTTCAACAACTCTCCTAGTCATTTCGCTAGCTGA 1383 0.4252 MNKPPRDDHERNNTVTTTTTTSSTLDSRFSQTLKNVQGLLKGRSMPGKVLMSRRSEPSDNSNSKVSSTYFKRSFSHNDAGTSDHISGAVEGEVQSTSKPVSTASVSRLKISTSLGERENLSDDFRKYTMGARATDSAKVTKFTKVLSGTVVILDKLRELAWSGVPDYMRPKVWRLLLGYEPPNSDRKEGVLRRKRGEYLDCISQYYDIPDSERSDDEVNMLRQIAVDCPRTVPDVPFFQQEQVQKSLERILYAWAIRHPASGYVQGINDLVTPFLVVFISEYLEGSIDDWSMSDLSSDKISNIEADCYWCLTKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVTQHIEDQGLEFLQFAFRWFNCLLIREIPFDLITRLWDTYLAEGDALPDFLVYIFASFLLTWSDKLRSLEFQELVMFLQHLPTQKWTHQDLEMVLSRAFMWHSMFNNSPSHFAS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g03001 460 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 200 324 - -
Trre7g03001 460 Pfam Rab-GTPase-TBC domain 167 410 IPR000195 -
Trre7g03001 460 FunFam TBC1 domain family, member 22B 194 324 - -
Trre7g03001 460 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 326 448 IPR035969 -
Trre7g03001 460 Gene3D - 136 189 - -
Trre7g03001 460 SMART tbc_4 160 416 IPR000195 -
Trre7g03001 460 ProSiteProfiles TBC/rab GAP domain profile. 163 390 IPR000195 -
Trre7g03001 460 FunFam TBC domain containing protein 325 460 - -
Trre7g03001 460 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 96 433 - -
Trre7g03001 460 MobiDBLite consensus disorder prediction 38 66 - -
Trre7g03001 460 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 143 350 IPR035969 -
Trre7g03001 460 FunFam TBC1 domain family member 137 189 - -
Trre7g03001 460 MobiDBLite consensus disorder prediction 1 25 - -
Trre7g03001 460 Gene3D - 325 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g03001 Trre-Chr7 27153731 27159569 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g03001 K20360 - gmx:100819281 767.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04560 11 57643758 57648805 Trre7g03001 7 27153731 27159569 PCT