Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04560 ATGAACAACAACGACAACAACAACAACAACAACAACAGCAAAGACACTACAATAGGAGTCCTTGATTCTCGATTCAATCAAACCCTCAGAAATGTTCAAGGGTTACTCAAGGGTCGTAGCATTCCTGGTAAAATATTATTGAGCCAAAGGGTAGATCCTATAGATAATTCAAGCTTATACTCGCCAACTTACAGCAGGAGTTCCTCATACAACGATACTGGCACTAGTGATCACAAAATTGAGACAGTAGAGGAGGAAGTTCACAGTGGAAGCAAACCATTTAGTACTCCCAATGATAATAAATTGAAAACATCAACCTCCCGTGTAGAGAACACATCTGAAGAAATCCGGAAATCTTCCATGGGTGGTAGAGCTACTGATTCTGCTAGAGTTATGAAGTTCACAAAGGTTCTTTCTGGAACCATGGTTATATTGGACAAATTGCGTGAATTAGCTTGGAGTGGTATTCCAGATTATATGCGTCCTACAGTGTGGAGACTTCTCTTGGGGTATGCACCAACTAATTCAGATAGAAGGGAGGGAGTTTTGAGAAGGAAGCGACTCGAGTATCTTGATTGTGTTTCTCAGTATTATGATATTCCCGATACAGAACGCTCAGATGATGAGATCAACATGCTTCGCCAGATTGCCGTTGATTGTCCAAGAACTGTACCCGAGGTTCCCTTCTTCCAGCAACCACAAGTTCAGAAATCACTGGAGCGTATTCTTTACGCATGGGCCATTCGGCATCCAGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACACCATTTTTTGTTGTTTTCCTATCAGAATACTTAGAAGGGAGCATAGATAATTGGACAATGTCCGATTTGTCTTCAGATCAAATCTCTAATGTAGAAGCTGACTGTTATTGGTGCTTGTCAAAATTGCTTGATGGTATGCAAGACCATTACACGTTTGCTCAACCAGGAATTCAAAGGCTTGTCTTTAAGTTGAAGGAATTGGTCAGGAGGATTGACGATCCTGTTTCAAGCCATATGGAGAATCAGGGACTGGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTAATCCGCGAGATACCCTTTCAACTTGTCACACGCCTTTGGGATACATATCTAGCCGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATTTGCCAGTTTTCTTCTTACGTGGTCAGACGAAATTCAGAAGCTTGATTTTCAAGAGTTAGTAATGTTCCTTCAACGCCTTCCAACTCAGAACTGGACTGACCAGGAGCTCGAGATGGTACTCTCTCGCGCATTTATGTGGCACAGCATGTTCAACAATTCTCCTAGCCATTTAGCTACCTAA 1359 0.418 MNNNDNNNNNNNSKDTTIGVLDSRFNQTLRNVQGLLKGRSIPGKILLSQRVDPIDNSSLYSPTYSRSSSYNDTGTSDHKIETVEEEVHSGSKPFSTPNDNKLKTSTSRVENTSEEIRKSSMGGRATDSARVMKFTKVLSGTMVILDKLRELAWSGIPDYMRPTVWRLLLGYAPTNSDRREGVLRRKRLEYLDCVSQYYDIPDTERSDDEINMLRQIAVDCPRTVPEVPFFQQPQVQKSLERILYAWAIRHPASGYVQGINDLVTPFFVVFLSEYLEGSIDNWTMSDLSSDQISNVEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDDPVSSHMENQGLEFLQFAFRWFNCLLIREIPFQLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSDEIQKLDFQELVMFLQRLPTQNWTDQELEMVLSRAFMWHSMFNNSPSHLAT 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04560 452 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 105 423 - -
Trre11g04560 452 FunFam TBC1 domain family member 129 181 - -
Trre11g04560 452 Gene3D - 317 452 - -
Trre11g04560 452 MobiDBLite consensus disorder prediction 89 107 - -
Trre11g04560 452 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 318 440 IPR035969 -
Trre11g04560 452 Gene3D - 132 183 - -
Trre11g04560 452 MobiDBLite consensus disorder prediction 56 76 - -
Trre11g04560 452 Pfam Rab-GTPase-TBC domain 159 404 IPR000195 -
Trre11g04560 452 SMART tbc_4 152 408 IPR000195 -
Trre11g04560 452 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 191 316 - -
Trre11g04560 452 ProSiteProfiles TBC/rab GAP domain profile. 155 382 IPR000195 -
Trre11g04560 452 FunFam TBC domain containing protein 317 452 - -
Trre11g04560 452 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 132 342 IPR035969 -
Trre11g04560 452 MobiDBLite consensus disorder prediction 56 124 - -
Trre11g04560 452 FunFam TBC1 domain family, member 22B 186 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04560 Trre-Chr11 57643758 57648805 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04560 K20360 - gmx:100785695 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04560 11 57643758 57648805 Trre11g04560 11 57643758 57648805 ECH
Trre11g04560 11 57643758 57648805 Trre7g03001 7 27153731 27159569 PCT