Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01676 ATGAGTGACGAAGGAGAAAGGACCTGTCCTCTCTGTGCCGAAGAGATGGATTTGACAGATCAGCAGTTGAAACCTTGTCGATGTGGTTATGAGATCTGTGTCTGGTGTTGGCACCACATAATGGACATGGCTGAGAAGGATGATACTGATGGGCGATGCCCTGCATGTCGTTCTCCTTATGATAAGGAAAAGATTGTTGGGACAGCGTCAAAGTGTGAAAGACTGCTGAGTGAAATTAATATGGAGAAAAAGGTGAAGAATCAGAAAGCCAAGTCTAAATCTTCTGATGGGCGGAAGCAGCTCAGTAGTGTGCGAGTGATTCAGCGAAACCTTGTTTACATAGTTGGATTGCCTCTGAATTTGGCAGATGAAGATCTTCTCCAGAATCGGGAGTATTTTGGTCAGTATGGGAAGGTCTTAAAAGTGTCAATGTCACGAACGGCAGCTGGTATCATTCAACAGTTTCCTAATGAAACTTGCAGTGTATATATTACTTATTCAAAGGAAGATGAAGCAATTCGGTGTATTCAAAATGTACATGGATTTGTTTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGAAATTCGCCTTGCATCAACCCCGATTGTCTATATCTGCACGAGGTTGGCTCTCAAGAAGATAGCTTTACAAAAGATGAAATAATTTCAGCGTACACTAGTCGAGTTCAACAAATTACTGGTACCACAAACAGTATGCAACGGCGGTCAGGGAATGTATTACCTCCTCCTCTAGATGATTTCTCCATTAATTCTACAGAAAAACCCATTGTTAAAAATGATCCTACTAACTCTGTACCTCTTCCCACAAATACAGTAAGAAGTTCGTCCCCAAATGGAATCAATGGGAGACATGTACCTCTTCCCACAAGTGCTGCGTGGGGTACACAGGCTACAAGTTGTCAATCCCCTGTTGGAGGTCTATCCAATCCATCTGTTCTGTCAAAGCCAAAATCTGATACAGTCAATGGCACACTTGCATTTTCTACTGCTGTTACGGGGACAATTCAGACTTCTGCAGCACCTTGTGATGGTTCAAGGAGGCCGCCATCGAGTGATGGGAGTCATAATACAATACCTAGGGTGAAAAAGGAATTGTCGAAACCTGTTAAACAATATCATAGCATGGACAGTCTGGCTAATGCAGGCGAAAAAACTTCTGCTTGTGATGTTTCTCCTGCACCTGTCAGTTTGAACAGCGAGCTGTCTTCTCGACCATTGTCACGGGATAGTGATAGAGGCAATGGTACTATAGCAAACACATTAAATTCTACTAACATTACTGGACATTCTTTTAGCTCTGGTCATGAGGAAGCAGTGTCTGCTACCAGTGAAGTGATTAGGAATTTGTCTACTGAGTTCTCCTCAATTAACATTGGTACAAGTACCTCAAATGAACAATTTGGTTTAAACAAACCTAGTAGCCCACCTATTGATCATGTCTTGACTAAATCTCAAATTCAAGAAGGATCACAATATGATGTTGACAGATTAAAAGACCCAATAACAACAAATGTGGTTGGTAAAATTTCCACATCAGATAATGGGGTTTTTAGTCCAAAGGAACAGTTTGGAGGGATATTGAATTCTCAATCTCCATTAGTATTAGATACAGCTGATATCGAAGATGATGTAATATCTTTTGATAATCAAAGACTTAAGGATCCAGAAGTTTGTCTTTCTTATTTACCCAAGGCCACAAATTTCCTGAATGTATCTAAACTTTCTAGCCCTAGTCTAATGCAGTATGGTGAACAATGTACTGCTGGAAATGCTGGTTCTCTATCTTCTGATGATAGAGTTCGAGATGAATCTATTTTACATTCGTCTAGTAGCATGTTCTGTAATGGCTATCCTGAGAAATTGATCAGTGGCAGCTCTAATGGTTTGCTTCATGATGAAAGAAACAGGCAAAGTATCGGAAGGTTAGTTGGTGATGCTGGGTGTGATGCTGCAATTGATAAGGGAGAAAGTAGCATTATCTCAAATATTCTGTCCATCGATTTTGATCCCTGGAATGACTCCATAACATCACCTCATAATATAGTGAAGTTGTTGGGTGACAATGCTGATAGCCAGCCAAGTCCTTTAAAAAAATCCAGTTCTTGGAAAGTTCAAAGTAACAATCAGTCAAGGTTCTCTTTTGCAAGGCAGGAAGAAGAATCTAAAATTCAAACTTTTGATATGCATTCGTCTTATGCTGTCAGCCAGCAACAGCCCAAGAGCCACACACTCAACCAGAATCTGGCAGAAAGAGATTTTTATATGGATAATTTGGGAATTGCAAATGGCTTTCCTACCAGTAACTTCGAGGAAGCTGAAAATATAGGCAGTGTTCATTCCATTGCTTCTTCCAATAAGCTTTCTCGTGAGTATTACTATCTTCCCTGA 2439 0.4055 MSDEGERTCPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMDMAEKDDTDGRCPACRSPYDKEKIVGTASKCERLLSEINMEKKVKNQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLQNREYFGQYGKVLKVSMSRTAAGIIQQFPNETCSVYITYSKEDEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNSPCINPDCLYLHEVGSQEDSFTKDEIISAYTSRVQQITGTTNSMQRRSGNVLPPPLDDFSINSTEKPIVKNDPTNSVPLPTNTVRSSSPNGINGRHVPLPTSAAWGTQATSCQSPVGGLSNPSVLSKPKSDTVNGTLAFSTAVTGTIQTSAAPCDGSRRPPSSDGSHNTIPRVKKELSKPVKQYHSMDSLANAGEKTSACDVSPAPVSLNSELSSRPLSRDSDRGNGTIANTLNSTNITGHSFSSGHEEAVSATSEVIRNLSTEFSSINIGTSTSNEQFGLNKPSSPPIDHVLTKSQIQEGSQYDVDRLKDPITTNVVGKISTSDNGVFSPKEQFGGILNSQSPLVLDTADIEDDVISFDNQRLKDPEVCLSYLPKATNFLNVSKLSSPSLMQYGEQCTAGNAGSLSSDDRVRDESILHSSSSMFCNGYPEKLISGSSNGLLHDERNRQSIGRLVGDAGCDAAIDKGESSIISNILSIDFDPWNDSITSPHNIVKLLGDNADSQPSPLKKSSSWKVQSNNQSRFSFARQEEESKIQTFDMHSSYAVSQQQPKSHTLNQNLAERDFYMDNLGIANGFPTSNFEEAENIGSVHSIASSNKLSREYYYLP 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01676 812 MobiDBLite consensus disorder prediction 355 438 - -
Trre7g01676 812 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 190 IPR000504 GO:0003723
Trre7g01676 812 MobiDBLite consensus disorder prediction 269 297 - -
Trre7g01676 812 CDD RRM_CNOT4 105 204 IPR034261 -
Trre7g01676 812 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
Trre7g01676 812 MobiDBLite consensus disorder prediction 313 335 - -
Trre7g01676 812 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Trre7g01676 812 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Trre7g01676 812 MobiDBLite consensus disorder prediction 355 373 - -
Trre7g01676 812 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 805 IPR039780 GO:0004842|GO:0030014
Trre7g01676 812 MobiDBLite consensus disorder prediction 244 297 - -
Trre7g01676 812 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Trre7g01676 812 SMART rrm2_1 111 192 IPR003954 GO:0003676
Trre7g01676 812 CDD mRING-HC-C4C4_CNOT4 8 58 IPR039515 -
Trre7g01676 812 SMART rrm1_1 111 192 IPR000504 GO:0003723
Trre7g01676 812 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Trre7g01676 812 MobiDBLite consensus disorder prediction 408 438 - -
Trre7g01676 812 Gene3D - 111 192 IPR012677 -
Trre7g01676 812 SUPERFAMILY RING/U-box 3 66 - -
Trre7g01676 812 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 111 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01676 Trre-Chr7 12879233 12883771 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01676 K10643 - gmx:100813427 1120.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01676 7 12879233 12883771 Trre11g04225 11 54926035 54939274 PCT