Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04225 ATGAGTACCTCAAGTTTCAATGGTGATAATGGTTACAAATTAAGTTCATGTCTTTTTCATTTATTTGCATCAATCCTTTTGAATGATGCTTCCTGTACGAGTTTCGTATTCTTCCCGATCTCACCACTAGCAATCATGAGTGATGAAGGAGAAAGGACTTGTCCTCTCTGTGCAGAAGAGATGGATCTGACAGATCAGCAATTGAGACCATGCAAATGTGGCTACCAGATTTGTGTCTGGTGTTGGCATCACATAATGGACATGGCTGAGAAGGATGCCACAGAGGGACGGTGTCCTGCATGTCGTTCTCCTTACGATAAGGAAAAGATTGTCGGGATGGCTGCAAACTGTGAGAGATTGGTGGCTGAAGTTCACATGGAAAGAAAGATGAAGAGCCAGAAAGCGAAGTCTAAAACATCTGAAGGACGGAAGCAGCTCAGCAATGTGCGAGTTATTCGGCGGAATCTTGTTTACATAGTGGGATTGCCTCTCGATCTGGCCGATGAAGATCTTCTCCAGCAGCGAGAGTATTTTGGTCAGTATGGGAAGGTTTTAAAAGTGTCAATGTCTCGGACGGCAGCTGGTGTTGTTCAGCAGTTTCCAAACAATACATGTAGTGTATATATTACTTATTCAAAGGAAGAAGAAGCAATTCGATGTATTCAAAATGTACATGGATTTGTTTTGGAGGGTAGACCATTAAGGGCTTGTTTTGGAACAACTAAATATTGCCATGCATGGCTCAGAAACATGCCTTGCAGCAATCCAGATTGTGTATATCTTCATGAGGTTGGCTCTCAAGAAGACAGTTTCACAAAAGATGAAGTAGTTTCAGCATACACTAGAAGTCATGTTCAACATATTACTGGTGCTGCAACCAACATGGAACGGCGGGCAGGGAATGTATTGCCTCCTCCGTTGGAGGATTGCACAAGTAACACTTCAGGGAAACCCATTGTCAAAAATTATTCAAGTAACTCTGTTAGTACCTTAAGAGGTTTGCCTCCTAATGGAAGTCATGCAAAGCCTGTTGCCCCCCCTGCTGCATGGGGTTTGCGGGCTACAAATTCTCAGCCAGCTGCTGGCAGTCTATCATGTCCAGCCGGACTGTCCAAGCCCAAGCCTGATTCAATCAGCAGCACGCTACCCTTTTCCTCGGCTGTTGCTGGCACAATTCCAGTTTCATTGCATAGTGATACAATAAAGAGGCCACTGTCAAGTGATGGGAGTCATAGTATAATGCCTGGAGCAAAAAATAATCGTACGGATGCCCTGGCTAGTGCAGGCGAAAAAACTTTGGCTTCTGATGTTTCTCCTGCACCTGTGAATTTGAGCACCCAGTTGTCTTCTATACCATTAGCTAAAGATAATTGTAGTGGGTGTTGTACAACATCAAGCACAACAAAGTCTATTGATATCACTACAAATTCAATCGGCAACTTAAGTCCTGGCAAAGCAATTACTGCTACCAATGAAGAGATTCAAAATTTGTCCGATGAGTTGTCCTCTGTTGACCTTGATAGAAATGCCCAAAATGAACATTACAGCGTAACCAAACCTAGCAGCCCACCCCGTGATTATGTATCGGTTAAGTCTAAGTCTATGCAGTCTCAAGGATTAGAATATAATGTGGACAAATTTAGAGACGAAATATTTACAACTTCAGCTAGTAATAAAGCTTCTATGTCAGATAATGGAGTCTGTAATTCAAAGGAACAATATGATTTGAAATTGGATTGTAAATCTGAGGTAGCATCAGGTTATGTTGAAGTTGAAGATGATGTGACATCTTTTGATAATCAGAGACTTAAGGATCCAGAAGTTGTTGGTCATTCTTATTTGCCTAGGTCTTGTTTCCCTCGTGTTGCAAATCATAATAATCCTCATCCTCTGCAGCATGGTGAACCTTGTACTGTTGTAAATTCTGGTTCTTTAGCCACAGAAAATCAAGTTGGGTTGCATCATGATGACAGGAATGATCACATTGGAAGAGTAATTAGTGAAGCAGTTAATATTGGAAGTGGTGCTGCTACAGATAAGGGTGAGAGTAGTATAATTTCAAATATATTGTCCATGGAGTTTGATACCTGGGATGACTCAATGTTATCACCCCACAATTTGGCGAAGTTGTTAAGTGACAGCACCGAAAATCAGAATGGTTCACTAAAGAAATCTAATTCTTGGAATGTTCAAACCAATCAATCAAGATTTTCTTTTGCAAGACAAGAGGAACCCAAAATCCAGACCTTTGATGTGAATCCATCTCATGGTGCCAACCAACAATATGTGAAAAGCCGCTCACTCATTCAAGATTTTATGGACACAACAGACATGTCTTTGGACAAGATTGGTTTTGCAAATGGCTTTCCCGCTAATAACATCGAGGAATCGGAAAATATAGGCAGTGGTCAATTTTTTGCTTCTTCCAATAAGCTTTCTGCTGTTCCTAAATCACAAGTTTCGGCGCCCCCTGGATTTTCAGTTCCAAGCAGGCCACCTCCTCCTGGTTTTTCTTCTCATGAGAGAATGGGGCAGGCTTTTGACTCAACTTCTGGGAATTCATCGCTAGATCCATCTTTCTTATGGAGAAATTCATATCAGACACCTTCAACTGGGAATTTTTGTGGGGCAGGAGACATTGAGTTTATGGATCCTGCTATTCTGGCAGTTGGTAAGGGGAGGCTTCAAGGTGCGCTAAGCAGCCCAACGCCGGACTTGCAATCCAATTACACCTCACAATTAAATTACCTTGAGAATGAGGCCAGGCTTCAGTTATTGATGCAGAGATCTCTCTCACCACAACAAAATCATCGATTTTCGGAAATTGGGAACACTTTTTCTCAGCTTGGTGAGTCTTATGGCATTTCTTCACGGATAGATCAATCACATGTCAGTAATCTGGCATCATTTCCTCAATTTTCTCTCCAGCAGGCCAGAAATGCTGTCATGTCAAATGGTAATTGGGATGGGTGGAATGAAATGCAGAATGGAAATAGTATGGGTATGGCTGAGCTTTTGCGAAACGAAAGACTTGGGTTTAATAAGTTTCATAGAGGATATGATGATTCAAGATACCAGATGCCAAATTCTGGAGATCTATACAACAACAGGACATTTGGGATTTGA 3126 0.4171 MSTSSFNGDNGYKLSSCLFHLFASILLNDASCTSFVFFPISPLAIMSDEGERTCPLCAEEMDLTDQQLRPCKCGYQICVWCWHHIMDMAEKDATEGRCPACRSPYDKEKIVGMAANCERLVAEVHMERKMKSQKAKSKTSEGRKQLSNVRVIRRNLVYIVGLPLDLADEDLLQQREYFGQYGKVLKVSMSRTAAGVVQQFPNNTCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNMPCSNPDCVYLHEVGSQEDSFTKDEVVSAYTRSHVQHITGAATNMERRAGNVLPPPLEDCTSNTSGKPIVKNYSSNSVSTLRGLPPNGSHAKPVAPPAAWGLRATNSQPAAGSLSCPAGLSKPKPDSISSTLPFSSAVAGTIPVSLHSDTIKRPLSSDGSHSIMPGAKNNRTDALASAGEKTLASDVSPAPVNLSTQLSSIPLAKDNCSGCCTTSSTTKSIDITTNSIGNLSPGKAITATNEEIQNLSDELSSVDLDRNAQNEHYSVTKPSSPPRDYVSVKSKSMQSQGLEYNVDKFRDEIFTTSASNKASMSDNGVCNSKEQYDLKLDCKSEVASGYVEVEDDVTSFDNQRLKDPEVVGHSYLPRSCFPRVANHNNPHPLQHGEPCTVVNSGSLATENQVGLHHDDRNDHIGRVISEAVNIGSGAATDKGESSIISNILSMEFDTWDDSMLSPHNLAKLLSDSTENQNGSLKKSNSWNVQTNQSRFSFARQEEPKIQTFDVNPSHGANQQYVKSRSLIQDFMDTTDMSLDKIGFANGFPANNIEESENIGSGQFFASSNKLSAVPKSQVSAPPGFSVPSRPPPPGFSSHERMGQAFDSTSGNSSLDPSFLWRNSYQTPSTGNFCGAGDIEFMDPAILAVGKGRLQGALSSPTPDLQSNYTSQLNYLENEARLQLLMQRSLSPQQNHRFSEIGNTFSQLGESYGISSRIDQSHVSNLASFPQFSLQQARNAVMSNGNWDGWNEMQNGNSMGMAELLRNERLGFNKFHRGYDDSRYQMPNSGDLYNNRTFGI 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04225 1041 CDD RRM_CNOT4 150 249 IPR034261 -
Trre11g04225 1041 Gene3D - 156 237 IPR012677 -
Trre11g04225 1041 SUPERFAMILY RING/U-box 46 111 - -
Trre11g04225 1041 Coils Coil 487 507 - -
Trre11g04225 1041 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 46 122 - -
Trre11g04225 1041 MobiDBLite consensus disorder prediction 400 417 - -
Trre11g04225 1041 MobiDBLite consensus disorder prediction 816 854 - -
Trre11g04225 1041 MobiDBLite consensus disorder prediction 400 431 - -
Trre11g04225 1041 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 235 IPR000504 GO:0003723
Trre11g04225 1041 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 156 237 - -
Trre11g04225 1041 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 241 IPR000504 GO:0003723
Trre11g04225 1041 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 122 IPR013083 -
Trre11g04225 1041 Pfam RING/Ubox like zinc-binding domain 54 106 - -
Trre11g04225 1041 CDD mRING-HC-C4C4_CNOT4 53 103 IPR039515 -
Trre11g04225 1041 ProSiteProfiles Zinc finger RING-type profile. 54 102 IPR001841 -
Trre11g04225 1041 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 46 1034 IPR039780 GO:0004842|GO:0030014
Trre11g04225 1041 SMART rrm2_1 156 237 IPR003954 GO:0003676
Trre11g04225 1041 SMART rrm1_1 156 237 IPR000504 GO:0003723
Trre11g04225 1041 SUPERFAMILY RNA-binding domain, RBD 149 235 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04225 Trre-Chr11 54926035 54939274 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04225 K10643 - gmx:100796804 1390.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04225 11 54926035 54939274 Trre11g04225 11 54926035 54939274 ECH
Trre7g01676 7 12879233 12883771 Trre11g04225 11 54926035 54939274 PCT