Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01652 ATGATTAGAAAAATAACTACCCTTTTGTTCTTGTTACTCCTTGTTGGAGTAACCATAACAATGTGTGAAGATGAAGAAAAATCAGAAGGGTCATCATCATCAAGTAAATTGTTCTTGATGGAAAATTCTAAGAGTGTTGTGAAAACTGATGCAGGGGAAATGAGGTTGTTTAAAAATAATGATGATAAGTTTTTGGATAGAAGTATGCACATTGGTTTGATTAATATGGAACCAAGATCATTGTTTATTCCTCAATATCTTGACTCCAATTTGATCATATTTGTCCGTAGAGGGGTAGCAAAGTTGGGATTCATATATGGAGATGAGCTAGAGGAAAGGAGAATACAGACAGGGGACTTATATGTAATTCCAGCAGGTTCTGTATTCTATTTAGTCAATATAGGTGAAGGTCAAAGACTTCATGTTATTTGCAGCATTGATCCCTCTACAAGCTTAGGTGACACTTTTCAGCCATTCTATATTGGAGGAGATAATCAACAATCAGTGCTTGCTGGATTCGAACCGGCTATTCTTGAAACTGCTTTTAATGAATCAAGAGCAAAGATACAGCGAATCATCAAGAAGAAACAAGATGGTCCAATTGTGTTCATTGATGATTCCCACTCTCCTAGCCAATGGACCAAATTCCTTAAACTGAAGAGTCAAGACAAAGTACAAAAACTTAAGACATTGGTACAAAGCCAAGAAGAAGATGAAGAGGAAAAGAAAACAAGTTGGTCATGGAGGAAGCTCGTGGAGAGTGTATTAGGAAAAGCGAACAAGAAGAACATAGAGAACAAAGACAGAGCTGATTCCCCTGACTCTTACAACCTCTACGACAAAAAACCCGATTTCAAAAATGCTTATGGTTGGAGCAGTGCATTGGATGGTGGCGATTATTCTCCTCTTAAAATACCCAACATTGGTGTTTTTAATGTCAATCTCACTGCGGGATCTATGATGGCACCACATGTGAATCCAAGGGCAACAGAGTATACCATAGTATTGAGAGGCTATGGAAGAATTCAAATACTATTTCCAAACGGAAGCAATGCAATGGAAACAGAAATCAAAGTAGGAGACATATTCTATATACCAAGATACTTTCCTTTCTGTCAAATAGCATCAAGAAATGGACCTTTAGAGTTCATTGGATTCACAACCTCATCAGAAAAGAGTAATCCACAGTTTCTAGCAGGTGCTGCATCACTTCTTAAGACCCTTTTAGGACCTGAACTTGCAGCTTCATTTGGTGTGAGTGTAGACACTATGAGAGATGTTGTTGATGCTCAACATGATGCTGTTATACTTTCTTCAACATGGGCTGCTCCTGGTGGTGGTGGTGGTGGGAAAAAAGAGGAAGATGTTTTGCATCTTCAAACAAAAGGTATTGAAGATATTTAA 1404 0.3796 MIRKITTLLFLLLLVGVTITMCEDEEKSEGSSSSSKLFLMENSKSVVKTDAGEMRLFKNNDDKFLDRSMHIGLINMEPRSLFIPQYLDSNLIIFVRRGVAKLGFIYGDELEERRIQTGDLYVIPAGSVFYLVNIGEGQRLHVICSIDPSTSLGDTFQPFYIGGDNQQSVLAGFEPAILETAFNESRAKIQRIIKKKQDGPIVFIDDSHSPSQWTKFLKLKSQDKVQKLKTLVQSQEEDEEEKKTSWSWRKLVESVLGKANKKNIENKDRADSPDSYNLYDKKPDFKNAYGWSSALDGGDYSPLKIPNIGVFNVNLTAGSMMAPHVNPRATEYTIVLRGYGRIQILFPNGSNAMETEIKVGDIFYIPRYFPFCQIASRNGPLEFIGFTTSSEKSNPQFLAGAASLLKTLLGPELAASFGVSVDTMRDVVDAQHDAVILSSTWAAPGGGGGGKKEEDVLHLQTKGIEDI 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01652 467 Gene3D Jelly Rolls 268 440 IPR014710 -
Trre7g01652 467 CDD cupin_7S_vicilin-like_C 283 434 - -
Trre7g01652 467 CDD cupin_7S_vicilin-like_N 46 204 - -
Trre7g01652 467 PANTHER OS03G0336100 PROTEIN-RELATED 7 439 - -
Trre7g01652 467 SMART Cupin_1_3 35 190 IPR006045 -
Trre7g01652 467 SMART Cupin_1_3 276 425 IPR006045 -
Trre7g01652 467 Pfam Cupin 44 146 IPR006045 -
Trre7g01652 467 Pfam Cupin 276 423 IPR006045 -
Trre7g01652 467 SUPERFAMILY RmlC-like cupins 45 434 IPR011051 -
Trre7g01652 467 Gene3D Jelly Rolls 26 221 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01652 Trre-Chr7 12643613 12646969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01652 31 445 Miscellaneous Gene Families AT2G18540 30.303 3.09e-43 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01652 - - gmx:547942 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04238 11 55072621 55075623 Trre7g01652 7 12643613 12646969 PCT