Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04238 ATGGGAAACAGATCCACCCTTTTGATCATGCTTCTTATTCTTTGTCATGGTGTATCCATGACAATGGGAATATGGGATATAGAAGATCAAGTAGATAAGTCTTCAAAGTCAGACAAATTGTTCTTGTTGGAAAACTCCAAGACTATGGTGAAGACTGATGCAGGAGAAATGAGAGTTTTGGAGAGTTATGGTGGTAGAATTTCTGAGAGACGTTTGCATATTGGTTTCATTTCTATGGAACCAAACTCACTTTTTGTTCCTCAATATCTTGATTCTACTCTCATTGTATTTGTCCTTTCAGGGGAAGCAAAGGTGGGATTCATGTATGAAAATCGATTGGCGGAGAGGAAATTGAAGAAGGGGGATGTGTATCAAATTCCAGCTGGTTCTGCATTCTATTTGTCAAATACTAAGGATTCTCAAAAACTTCACATTGTTTGCAGCATTGACCCCTCTGAGAGTTTAGGACTAGGCATTTTCCAGTCTTTCTATATTGGAGGAGGATCCAGTCCAGTATCGGTACTTTCCGGATTCCAGCCTCAAATCCTTGAATCCGCTTTTAACGTATCGGGATCAGAGTTGAAGAAACTTTTCAGTAAGCAACATGAGGGTCCAATTGTGCACGTAGGTCATTCACATTCCAAAGCCTCAAGCTTATGGACCAAGTTCCTTCAACTAAAAGAAGATGAAAAACTGCACCACATGAAGAAAATGTTGCAAGATCAAGAAGAAGATGAAGATAATAATGATGAAGTGGAGAAAAAAACAAGTTGGTCTTGGAGGAAGCTATTGGATTCTGTATTTGGTGATGAGATAGAAAACAAGAAAATAGACCAAGTTGCCCATAAATCTCCTCACTCTGTCAATCTCTATGACAGAAAACCAGATTTCAAAAACAGTTATGGTTGGAGTGTTGCTCTAGACGGTTCCGATTATTCTCCTCTCAAAAGTTCCGGCATTGGCATTTATCACGTCAATCTCAAACCGGGATCGATGATGACACCGCATGTAAATCCAAGGGCGACGGAGTATGGCGTAGTCATAAAAGGTTCAGGTAGAATTCAAATAGTATTTCCAAATGGAAGCAATGCAATGGACACAAGTATAAAAGAAGGAGATGTTTTCTTTGTACCAAGATACTTTGCATTTAGCCAAATAGCATCAAGTAGTGAACAACTAGATTTCTTTGGATTCACTACTTCAGCAAAGAAGAACAAACCACAGTTTTTGGTAGGTGCTACATCACTTATGAAGACATTGATGGGACCTGAACTTGCAGCTGCTTTTGGTGTGAGTGAAGATACAATGGAAAACATCCTTAATGCACAACATGAGGGTGTTATAATTCCTACACAAAGGGATACACTTAAAGAAAAGAATTATAAGAATGACTTGATGAATTTAGAGATGGTTCCTAAGATAGAAACAATCATGACATGA 1440 0.3861 MGNRSTLLIMLLILCHGVSMTMGIWDIEDQVDKSSKSDKLFLLENSKTMVKTDAGEMRVLESYGGRISERRLHIGFISMEPNSLFVPQYLDSTLIVFVLSGEAKVGFMYENRLAERKLKKGDVYQIPAGSAFYLSNTKDSQKLHIVCSIDPSESLGLGIFQSFYIGGGSSPVSVLSGFQPQILESAFNVSGSELKKLFSKQHEGPIVHVGHSHSKASSLWTKFLQLKEDEKLHHMKKMLQDQEEDEDNNDEVEKKTSWSWRKLLDSVFGDEIENKKIDQVAHKSPHSVNLYDRKPDFKNSYGWSVALDGSDYSPLKSSGIGIYHVNLKPGSMMTPHVNPRATEYGVVIKGSGRIQIVFPNGSNAMDTSIKEGDVFFVPRYFAFSQIASSSEQLDFFGFTTSAKKNKPQFLVGATSLMKTLMGPELAAAFGVSEDTMENILNAQHEGVIIPTQRDTLKEKNYKNDLMNLEMVPKIETIMT 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04238 479 Gene3D Jelly Rolls 32 222 IPR014710 -
Trre11g04238 479 SMART Cupin_1_3 40 195 IPR006045 -
Trre11g04238 479 SMART Cupin_1_3 288 437 IPR006045 -
Trre11g04238 479 CDD cupin_7S_vicilin-like_N 49 209 - -
Trre11g04238 479 CDD cupin_7S_vicilin-like_C 295 445 - -
Trre11g04238 479 Gene3D Jelly Rolls 280 451 IPR014710 -
Trre11g04238 479 PANTHER OS03G0336100 PROTEIN-RELATED 5 451 - -
Trre11g04238 479 SUPERFAMILY RmlC-like cupins 28 445 IPR011051 -
Trre11g04238 479 Pfam Cupin 49 192 IPR006045 -
Trre11g04238 479 Pfam Cupin 289 435 IPR006045 -
Trre11g04238 479 Coils Coil 235 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04238 Trre-Chr11 55072621 55075623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04238 32 448 Miscellaneous Gene Families AT2G18540 29.206 1.92e-45 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04238 - - gmx:100818796 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04238 11 55072621 55075623 Trre11g04238 11 55072621 55075623 ECH
Trre11g04238 11 55072621 55075623 Trre7g01652 7 12643613 12646969 PCT