Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01478 ATGAGAGACAAATTTTCATGTTTTAGTGAAAATTCAATAAATGTCTCAAATTATTCATGTTCTAGTTATTCAAACAACCCATGTATTTCACAAAACATTGTTTCACCTTCAATTCAAAACTCAATTTCAAGTGTTTACAAATTAGTACTTTCAACATTGAAACAGATTTTAATCACTGTAACTTGGTGTAAAAATCATTCAAATCAAGGACTCAGCATAAGTTTTGGTGATGATGATCCTTCTAATGTTCCAACTTTCAGACTCAACACAAATTCGAGGTTTTTTCGCAAGAAAAAAGGTAGCAAATTGCTCGATTTCGATGATTCTAAGAGGTTACAATGGAATTTTAGAGGGAATCAAACAATTTTTGTTGATGGTTTGTTGGTTGATTTACTTTGGGATGTTCATGATTGGTTCTTCAATCCTGTTTCTGGTTATGCTGTGTTCATGTTTAGAACAAGAAGTGGTTTGGATAGTAGATTGTGGTTAGAAGAGAAGCAACAACATTCACACAACAAAGATAAAGATAGAGTTGAATTCTCCTTCTTGATTTATGCATGTAAGAGTTCATAA 573 0.3176 MRDKFSCFSENSINVSNYSCSSYSNNPCISQNIVSPSIQNSISSVYKLVLSTLKQILITVTWCKNHSNQGLSISFGDDDPSNVPTFRLNTNSRFFRKKKGSKLLDFDDSKRLQWNFRGNQTIFVDGLLVDLLWDVHDWFFNPVSGYAVFMFRTRSGLDSRLWLEEKQQHSHNKDKDRVEFSFLIYACKSS 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01478 190 PANTHER EXPRESSED PROTEIN 110 188 IPR008586 -
Trre7g01478 190 Pfam Plant protein of unknown function (DUF868) 38 105 IPR008586 -
Trre7g01478 190 Pfam Plant protein of unknown function (DUF868) 110 188 IPR008586 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01478 Trre-Chr7 10919218 10920156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g01478 110 189 EF-hand Containing Proteins AT5G28150 44.444 8.19e-15 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01478 - - gmx:100794621 147.902
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03738 11 50696092 50697036 Trre7g01478 7 10919218 10920156 PCT