Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01356 ATGTTGTTACAAACATTAGAAGACACTGTTGGTAAAAACAACATCACAATTTTCGCACCTAAAAACGAAGCTCTAGAAAGAGATCTTGATCCTAATTTCAAGATTTTTCTTCTTGAACCGAGGAATCTTAAATCTCTTCAGACTCTGTTAATGTCGCATATTATTCCGACCCGAATTAATGGATCCGGTTTAGAATTCGGGTTGACCCGACATAGAACACTTTCTAAGGTTCATCAACTGAGTATTCAATCGAATGGAACATCTCAACAATGGACTGTTAACGGTGCTAAGATTTTTCATCTTAACGCCGTTACTAGACCTGACGGTGTTATTCACGGAATTGAACGGCTTCTTATTCCACGTTCTGTTCAAGATGATTTTAACCGTCGTCGGAGTCTTGTGTCGATTGCGGCTATTAAGCCGGAAGGAGCACCGGAGGTTGATCCGAGAACTCATCGGTTGAAGAAACCTGCTCCGCCGCAGAATCCTGGCTCACCGCCAGTACTTCCAATTTACGATGCATTGGCTCCGGGACCTTCGCTGGCACCGGCGCCAGCACCAGGACCTGGTGGACCCCACCACCATTTCAACGGCGAGGCGCAGGTGAAAGATTTCATTCAAACACTGATTCATTACGGTGGTTATAATGAGATGGCGGACATTCTTGTTAACCTAACGTCATTAGCGACGGAAATGAGTAGGTTAGTTTCAGAGGGTTATGTTTTAACTGTTCTAGCTCCAAATGATGAAGCTATGGCTAAGTTAACGACGGATCAGTTAAGTGAACCGGGTTCACCTGAACAAATCATGTATTATCATTTGATTCCCGAGTATCAAACCGAAGAGAGTATGTATAATGCTGTTAGAAGATTCGGGAAAGTTCGTTATGATACACTTCGATTGCCTCATAAGGTTGATGCTCAAGAAGCTGATGGGTCGGTGAAATTCGGGCATGGTGATGGGTCGGCTTATTTGTTCGACCCGGATATTTACACTGATGGAAGGATCTCTGTACAAGGAATTGATGGAGTTTTGTTTCCACATCAAGAAGAGGAAGTTAATGTTGATAAGGATGTGACCCGAACGGGTCAACCCGCTAAAGTTGTGGCTAAGCAAAGAAGAGGAAAACTACTGGAAACAGCTTGCTGGATGCTTGGAACCGTTGGACAGCATTCTAGATTCACCTCTTGTCAATAA 1197 0.4369 MLLQTLEDTVGKNNITIFAPKNEALERDLDPNFKIFLLEPRNLKSLQTLLMSHIIPTRINGSGLEFGLTRHRTLSKVHQLSIQSNGTSQQWTVNGAKIFHLNAVTRPDGVIHGIERLLIPRSVQDDFNRRRSLVSIAAIKPEGAPEVDPRTHRLKKPAPPQNPGSPPVLPIYDALAPGPSLAPAPAPGPGGPHHHFNGEAQVKDFIQTLIHYGGYNEMADILVNLTSLATEMSRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGSPEQIMYYHLIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVDAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPHQEEEVNVDKDVTRTGQPAKVVAKQRRGKLLETACWMLGTVGQHSRFTSCQ 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01356 398 Gene3D FAS1 domain 195 348 IPR036378 -
Trre7g01356 398 Gene3D FAS1 domain 1 121 IPR036378 -
Trre7g01356 398 SUPERFAMILY FAS1 domain 4 121 IPR036378 -
Trre7g01356 398 ProSiteProfiles FAS1/BIgH3 domain profile. 1 118 IPR000782 -
Trre7g01356 398 SMART fasc_3 243 348 IPR000782 -
Trre7g01356 398 SMART fasc_3 16 121 IPR000782 -
Trre7g01356 398 ProSiteProfiles FAS1/BIgH3 domain profile. 202 345 IPR000782 -
Trre7g01356 398 FunFam Fasciclin-like arabinogalactan protein 16 197 348 - -
Trre7g01356 398 MobiDBLite consensus disorder prediction 142 196 - -
Trre7g01356 398 Pfam Fasciclin domain 225 347 IPR000782 -
Trre7g01356 398 Pfam Fasciclin domain 6 120 IPR000782 -
Trre7g01356 398 SUPERFAMILY FAS1 domain 181 347 IPR036378 -
Trre7g01356 398 MobiDBLite consensus disorder prediction 159 173 - -
Trre7g01356 398 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 2 395 IPR044654 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01356 Trre-Chr7 9886318 9889101 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01356 - - gmx:100790599 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03880 11 52073678 52076286 Trre7g01356 7 9886318 9889101 PCT