Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03880 ATGGATTATTGCATCTCCACCGTTCTTCTCCTCTCCTTTCTCACCATTCTTTCATCTTCTTCACCAACGAGTCAAATCAACTCTAACTCAGTTCTAGTAGCACTTCTTGACTCACATTACACTGAACTCGCTGAACTCATTGAAAAAGCCATGCTATTACAAACACTAGAAAACACCGTTGCTACCCACAACATCACAATCTTTGCTCCAAATAATCAAGCTCTTGAACGTAATCTTGATTCCGATTTCAAACAGTTTCTTCTCCAACCGGGTAATATCCATTCCCTTCAAACTCTCCTCTTGTTCCACGTCATTCCAACCCGAATCGGATCCGGGTCAACCCGACACCAACACAAAACTCTCTCCGACCACCATCTTCACCTTGAAACAAATATCACCACCGGAGAATGGACTGTTAATCAAGCCAAAGTAACCCACCCGAATATTCTAACCCGACCCGACGGTGTCATTCACGGGATCCAGCGTCTTCTTATACCACGCTCCGTTGAAGATGATTTCAACAAACGCCGTAGTCTCCGTTCAATCACCGCCGTGAAACCGGAGGGAGCACCGGATGTTGACATTAGAAACCACCGATTAAAAAAATCTCCTCCGCCGGAAAAACCAGGTTCACCACCGGCACTTCCGATCTACGACGCTATGTCACCGGGACCATCGCTAGCTCCGGCGCCGGCACCGGGACCAGGAGGTCCACACCACCACTTCAACGGCGAGGCACAAGTAAAGGATTTCATCAAAACGTTACTTCATTACGGTGGTTACAACGAAATGGCTGATATTCTCGTTAACCTAACGTCGTTAGCAACTGAAATGAGCCGTTTAGTTTCAGAAGGTTATGTGTTAACGGTTTTGGCTCCAAATGACGAAGCAATGGCAAAGTTAACGACGGAGCAGTTAAGTGAACCGGGTTCACCTGAAGAGATAATGTATTACCATATTATCCCTGAGTATCAAACTGAAGAGAGTATGTATAATGCTGTTAGAAGATTCGGGAAGGTTCGGTATGATACATTGCGGTTGCCGCATAAGGTGGTGGCTGAGGAGGCTGATGGGTCTGTTAAATTTGGAAATGGTGATGTTTCGGGTTATTTGTTTGACCCGGATATTTATACCGATGGGAGGATCTCTGTGCAGGGGATTGATGGGGTTTTGTTTCCTATGGAGGAGGAGAAGGAGGAGGTTGTGGAGCGGGCTAAACCCGTTTCGAAGATGGTTCAACCCGGGAAAGTCGTTGTTCAACATAGGAGAGGTAAACTGCTGGAAACAGCATGCTGGATGCTTGGAACATTTAGAAATCATTCTAGATTCGCCTCTTGTCAATGA 1344 0.4613 MDYCISTVLLLSFLTILSSSSPTSQINSNSVLVALLDSHYTELAELIEKAMLLQTLENTVATHNITIFAPNNQALERNLDSDFKQFLLQPGNIHSLQTLLLFHVIPTRIGSGSTRHQHKTLSDHHLHLETNITTGEWTVNQAKVTHPNILTRPDGVIHGIQRLLIPRSVEDDFNKRRSLRSITAVKPEGAPDVDIRNHRLKKSPPPEKPGSPPALPIYDAMSPGPSLAPAPAPGPGGPHHHFNGEAQVKDFIKTLLHYGGYNEMADILVNLTSLATEMSRLVSEGYVLTVLAPNDEAMAKLTTEQLSEPGSPEEIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAEEADGSVKFGNGDVSGYLFDPDIYTDGRISVQGIDGVLFPMEEEKEEVVERAKPVSKMVQPGKVVVQHRRGKLLETACWMLGTFRNHSRFASCQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03880 447 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 18 438 IPR044654 -
Trre11g03880 447 FunFam Fasciclin-like arabinogalactan protein 16 243 394 - -
Trre11g03880 447 SUPERFAMILY FAS1 domain 29 167 IPR036378 -
Trre11g03880 447 ProSiteProfiles FAS1/BIgH3 domain profile. 27 164 IPR000782 -
Trre11g03880 447 MobiDBLite consensus disorder prediction 183 242 - -
Trre11g03880 447 Pfam Fasciclin domain 39 166 IPR000782 -
Trre11g03880 447 Pfam Fasciclin domain 271 362 IPR000782 -
Trre11g03880 447 Gene3D FAS1 domain 31 167 IPR036378 -
Trre11g03880 447 Gene3D FAS1 domain 242 393 IPR036378 -
Trre11g03880 447 MobiDBLite consensus disorder prediction 191 205 - -
Trre11g03880 447 ProSiteProfiles FAS1/BIgH3 domain profile. 248 391 IPR000782 -
Trre11g03880 447 SMART fasc_3 289 394 IPR000782 -
Trre11g03880 447 SMART fasc_3 66 167 IPR000782 -
Trre11g03880 447 SUPERFAMILY FAS1 domain 227 394 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03880 Trre-Chr11 52073678 52076286 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03880 - - gmx:100782264 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03880 11 52073678 52076286 Trre7g01356 7 9886318 9889101 PCT