Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01304 ATGGCGACACTCGATTCCGATGTGCCTATGGTTCCCGCCGGCGAAGCTTCAAGCAGTGGCGCCGGTCCATCTTCCAAGAAACCCAAGCGATTCGAGATCAAGAAGTGGAACGCTGTCGCTCTCTGGGCATGGGATATCGTTGTTGATAACTGTGCTATCTGCCGAAACCACATCATGGATCTCTGCATCGAGTGCCAAGCTAATCAGGCTAGCGCTACTAGCGAGGAATGCACTGTTGCTTGGGGGGTTTGTAACCACGCTTTTCACTTCCATTGCATTAGCAGATGGCTCAAGACTCGTCAAGTGTGTCCTCTAGATAACAGTGAGTGGGAGTTTCAGAAATATGGCCACTAG 354 0.5113 MATLDSDVPMVPAGEASSSGAGPSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01304 117 CDD mRING-H2-C3H2C2D_RBX1 49 110 - -
Trre7g01304 117 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 117 IPR013083 -
Trre7g01304 117 MobiDBLite consensus disorder prediction 1 29 - -
Trre7g01304 117 FunFam E3 ubiquitin-protein ligase RBX1 18 117 - -
Trre7g01304 117 Pfam RING-H2 zinc finger domain 49 107 IPR024766 GO:0008270
Trre7g01304 117 SUPERFAMILY RING/U-box 29 114 - -
Trre7g01304 117 PANTHER RING BOX 30 116 - -
Trre7g01304 117 ProSiteProfiles Zinc finger RING-type profile. 62 107 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01304 Trre-Chr7 9420299 9423079 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01304 K03868 - gmx:100789570 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03928 11 52580450 52584083 Trre7g01304 7 9420299 9423079 PCT