Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03928 ATGGCGACACTCGATTCCGACGTTCCAATGGTTCCCGCCGGCGAGTCTTCCTGCTGCGCTCACGGTGCATCTTCTTCCAAGAAGCCTAAGCGATTCGAGATCAAGAAGTGGAATGCCGTTTCTCTCTGGGCTTGGGATATTGTTGTTGATAACTGTGCTATCTGTAGGAATCATATCATGGATCTCTGCATTGAGTGTCAAGCAAACCAGGCTAGTGCTACTAGCGAGGAATGCACAGTTGCTTGGGGGGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGTTGAAAACTCGTCAAGTTTGCCCACTAGATAACAGTGAGTGGGAGTTTCAGAAATACGGTCACTAA 357 0.479 MATLDSDVPMVPAGESSCCAHGASSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03928 118 PANTHER RING BOX 31 117 - -
Trre11g03928 118 ProSiteProfiles Zinc finger RING-type profile. 63 108 IPR001841 -
Trre11g03928 118 FunFam E3 ubiquitin-protein ligase RBX1 19 118 - -
Trre11g03928 118 CDD mRING-H2-C3H2C2D_RBX1 50 111 - -
Trre11g03928 118 SUPERFAMILY RING/U-box 30 115 - -
Trre11g03928 118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 118 IPR013083 -
Trre11g03928 118 Pfam RING-H2 zinc finger domain 50 108 IPR024766 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03928 Trre-Chr11 52580450 52584083 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03928 K03868 - twl:119992954 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03928 11 52580450 52584083 Trre7g01304 7 9420299 9423079 PCT