Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g01233 ATGGCCACCGTAACTTCTTCATTCTCCTTCTCAACACTCACTCAATCTTCTCAAAACAAACAACTAACCTTTTCTTCCACTCGCTTCCTTAGCTCCGATTCCGACACCGTTCGGTTCCGTTTCAGCTTATCATCAAACTATGTTGGAGTTCGAACTTCCAATTCCATTTCCAAAATGGTTGTTCGGTGTTCATCTTCTGTTTCAGACCCTCCAACTGTTTCTGAGACAAAGTTAAATTTTCTCAAGGCATATAGTCGACCAATACCTAGTATCTACAATTCCGTGCTGCAGGAGCTCATTGTCCAGCAACATCTGATGAGATATAAGAAGTCATACCGTTATGATCCTGTATTTGCTCTTGGCTTTGTCACTGTATATGACCAACTCATGGAAGGGTATCCTAGTGATGAGGACACAGATGCCATCTTCAAAGCATACATTAACGCATTGAAGGAAGATCCAGACCAATACAGAGTAGATGCACAGAAGTTGGAAGACTGGGCTCGTGCTCAAAATTCAACTTCCTTGATTGAGTTTTCATCCAGAGAAGGAGAAGTTGAGGGGGTTTTAAAGGATATAGCAGAAAGAGCAGGTGGAAAGGGCGATTTCAGCTATAGTCGTTTCTTTGCAGTAGGAATTTTTCGTCTTCTTGAGTTGGCAAATGCAATGGAACCAACAATTTTGGAAAAGCTTTGTGCGTCTTTGAATATCAACAAAAGAAGTGTGGATCGGGACTTGGACGTGTATCGCAATCTGCTTTCTAAGTTGGTTCAAGCTAAAGAGCTGCTGAAAGAATATATTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGACTGAACCACAAAAGGCTAATGAGGCCATTACAAAATGTTTGGGACAAGACCGAACTTTTGATATGATAACAAGTTAA 909 0.4103 MATVTSSFSFSTLTQSSQNKQLTFSSTRFLSSDSDTVRFRFSLSSNYVGVRTSNSISKMVVRCSSSVSDPPTVSETKLNFLKAYSRPIPSIYNSVLQELIVQQHLMRYKKSYRYDPVFALGFVTVYDQLMEGYPSDEDTDAIFKAYINALKEDPDQYRVDAQKLEDWARAQNSTSLIEFSSREGEVEGVLKDIAERAGGKGDFSYSRFFAVGIFRLLELANAMEPTILEKLCASLNINKRSVDRDLDVYRNLLSKLVQAKELLKEYIDREKKKREERTEPQKANEAITKCLGQDRTFDMITS 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g01233 302 Pfam Thylakoid formation protein 72 277 IPR017499 GO:0010207|GO:0015979
Trre7g01233 302 Coils Coil 249 276 - -
Trre7g01233 302 Hamap Protein Thf1 [thf1]. 67 275 IPR017499 GO:0010207|GO:0015979
Trre7g01233 302 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 295 IPR017499 GO:0010207|GO:0015979
Trre7g01233 302 NCBIfam photosystem II biogenesis protein Psp29 69 274 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g01233 Trre-Chr7 8711977 8715694 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g01233 - - aip:107632658 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01233 7 8711977 8715694 Trre7g01233 7 8711977 8715694 ECH
Trre11g04010 11 53347678 53351045 Trre7g01233 7 8711977 8715694 PCT