Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04010 ATGGCTGCTTTAACTTCTCTGTCATTCTCAGCAACAACTCAATGCTCACAGAGAAAATCAACTCTGCCTTCTTCTACTCGTTTCCTTGCTTCCAGTTCTGATATCTTTGGAATTCGGATAGATTCCTCATACTATCATCATGTTGGTGTTAGAGCTTCCAATTCTGCATCTAAAATGGTTATTCAATGCATGTCTTCTGTCACAGATGTTCCAAGTGTTTCCGAGACAAAGTTAAATTTCCTAAAGGCATATAAACGACCGATCCCTAGTATCTATAACAATGTGCTGCAGGAGCTCATTGTCCAGCATCATTTAATGAGATACAAGACATCATACCGTTATGATCCTGTATTTGCTCTTGGTTTTGTCACTGTTTATGATAAACTCATGGAAGGGTATTCTAGTGACGAGGAACGAGATGTCATCTTCAAAGCTTATATTAACGCGTTGAAGGAAGATCCAGAACAATACAGAATAGATGCACAGAAGTTGGAAGAGTGGGCTAGGACTCAAAACTCTACTTCCCTGGTTGAGTTTTCATCCAAAGAAGGAGAAATTGAAGGGATTTTAAAGGATATAGCACATAGAGCAGGAGGAAAGGGTGAATTCAGTTATAGTCGTTTCTTTGCGGTAGGCCTTTTTCGCCTTCTTGAGTTGGCAAATGCGACAGAACCAACAATTTTAGACAAGCTTTGTGCGGCTTTGAACATCAACAAAAAAAGCGTTGATCGGGACTTGGATGTGTATCGTATGCTTCTTTCCAAGCTGGTTCAAGCGAAAGAGCTGCTAAAGGAATACATTGACAGGGAGAAGAAGAAAAAAGAAGAAAGGGCGGCGGAACCACAGAAGGCTAATGAGGCCGTTTCAAAATGTTTGGGACAACAATTGTCTGTTATGTAG 900 0.4056 MAALTSLSFSATTQCSQRKSTLPSSTRFLASSSDIFGIRIDSSYYHHVGVRASNSASKMVIQCMSSVTDVPSVSETKLNFLKAYKRPIPSIYNNVLQELIVQHHLMRYKTSYRYDPVFALGFVTVYDKLMEGYSSDEERDVIFKAYINALKEDPEQYRIDAQKLEEWARTQNSTSLVEFSSKEGEIEGILKDIAHRAGGKGEFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKKSVDRDLDVYRMLLSKLVQAKELLKEYIDREKKKKEERAAEPQKANEAVSKCLGQQLSVM 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04010 299 Coils Coil 256 276 - -
Trre11g04010 299 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 297 IPR017499 GO:0010207|GO:0015979
Trre11g04010 299 Pfam Thylakoid formation protein 73 277 IPR017499 GO:0010207|GO:0015979
Trre11g04010 299 Hamap Protein Thf1 [thf1]. 67 275 IPR017499 GO:0010207|GO:0015979
Trre11g04010 299 NCBIfam photosystem II biogenesis protein Psp29 69 274 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04010 Trre-Chr11 53347678 53351045 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04010 - - gmx:100814341 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04010 11 53347678 53351045 Trre11g04010 11 53347678 53351045 ECH
Trre11g04010 11 53347678 53351045 Trre7g01233 7 8711977 8715694 PCT