Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00343 ATGCAAAGATTCCATCTTGGTAGTACTACTATCTCTCGAAATCAAAACTTGATGATGGATTCTTCTTCATCTCCTCTTTCTCTTCAAACTCAAAAATCACCTTTTCAAGACCCACATGAAGAGGAATCCTCACATAAACCAACCAAAAAAACCTTACTTTCCTCTTTAATGGGTACTAATAACAACACTTCTTCAACCCTTAGAACCCCTTCTTTTGAAGAAGATAACTACTTTGTTACTCTTCTCAAATCCTCAGAGAAAAAAGCACTTCAAGACCTTAAAAAAAATCTCCTTGAAGCAACTTCTAATGGAGTTGAAGTTGGTGTTTCCATGTGGGGTATTCCTCTTCTTGGTGGTGATGACAAAGCTGATGTAATCCTCTTGAAATTTCTAAGAGCAAGAGATTTTAGAGTTAATGAAGCACTAAACATGATTATAAAGTGTTTAGCTTGGAGAAAAGAGTTTAATGCTGACACAATAGTTGAAGAAGATTTAAGTCAGTTCAAAGAGCTTGAAGGTGTTATAGCTTATATGCAAGGCTATGACAAAGAGGGTCATCCTGTTTGTTACAATGCTTATGGTTTGTTTAGAGATAAGGAAATGTATGAGAAAATTTTTGGTGATGAAGAAAAGCTTCAAATGTTTCTTAGATGGAGAGTTCAAGTTCTTGAAAGAGGTATTAGGCTTCTTCATTTTAAGCCTGGTGGTGTTAATTCTCTTATTCAAGTTACTGATCTTAAAGATATGCCTAAAAGAGAGTTAAGGGTTGCTTCTAACCATATCATGTCACTCTTTCAAGATAACTACCCTGAAATGGTTGCTAGAAAGATTTTCATCAATGTGCCATGGTACTTCAGCATGTTGTATTCAATGTTTAGTCCATTTTTGACTCAAAGGACTAAGAGCAAGTTTGTGATCTCAAAGGAAGGAAATGCTGCTGAGACACTCTACAAATTCATTAGTCCTGAGGATATTCCTGTTCAGTATGGAGGGCTGAGTGTTCCAAGTGATTTGCAAAATGGTCCCCCAAAACCTGCTTCTGAATTCACTGTCAAAGGAGGAGAGAAAGTGAATATACAAATAGAAGGAATTGAGGGAGGTGCAACTATCACTTGGGACATTGTTGTGGGAGGTTGGGACTTAGAATACAGTGCTGAATTTGTCCCAAATGCTGAAGGAAGCTACACTATAGCAGTTGAGAAGCCAAAAAAGATTGGAGCCTCAGAACCAGCAATTCACAACTCATTCACATCAAAAGAATCGGGAAAAATGATACTCTCGGTCGACAACACTGCCTCCAGAAAGAAGAAAGTTGCTGCTTATCGTTACGTCGTCCGCAAATGCGCTACCACTTGA 1356 0.3783 MQRFHLGSTTISRNQNLMMDSSSSPLSLQTQKSPFQDPHEEESSHKPTKKTLLSSLMGTNNNTSSTLRTPSFEEDNYFVTLLKSSEKKALQDLKKNLLEATSNGVEVGVSMWGIPLLGGDDKADVILLKFLRARDFRVNEALNMIIKCLAWRKEFNADTIVEEDLSQFKELEGVIAYMQGYDKEGHPVCYNAYGLFRDKEMYEKIFGDEEKLQMFLRWRVQVLERGIRLLHFKPGGVNSLIQVTDLKDMPKRELRVASNHIMSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNAAETLYKFISPEDIPVQYGGLSVPSDLQNGPPKPASEFTVKGGEKVNIQIEGIEGGATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPKKIGASEPAIHNSFTSKESGKMILSVDNTASRKKKVAAYRYVVRKCATT 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00343 451 Gene3D - 157 343 IPR036865 -
Trre7g00343 451 Gene3D GOLD domain 344 445 - -
Trre7g00343 451 MobiDBLite consensus disorder prediction 49 67 - -
Trre7g00343 451 MobiDBLite consensus disorder prediction 1 34 - -
Trre7g00343 451 SUPERFAMILY CRAL/TRIO domain 170 333 IPR036865 -
Trre7g00343 451 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 162 337 IPR001251 -
Trre7g00343 451 SMART CRAL_TRIO_N_2 123 148 IPR011074 -
Trre7g00343 451 Coils Coil 83 103 - -
Trre7g00343 451 Pfam CRAL/TRIO, N-terminal domain 100 147 IPR011074 -
Trre7g00343 451 Pfam CRAL/TRIO domain 172 331 IPR001251 -
Trre7g00343 451 FunFam SEC14 cytosolic factor family protein 172 347 - -
Trre7g00343 451 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 348 445 IPR036598 -
Trre7g00343 451 CDD SEC14 165 332 IPR001251 -
Trre7g00343 451 Gene3D - 80 154 - -
Trre7g00343 451 SUPERFAMILY CRAL/TRIO N-terminal domain 83 164 IPR036273 -
Trre7g00343 451 SMART sec14_4 170 334 IPR001251 -
Trre7g00343 451 ProSiteProfiles GOLD domain profile. 313 447 IPR009038 -
Trre7g00343 451 PANTHER PATELLIN-1 39 447 IPR044834 GO:0008289
Trre7g00343 451 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00343 Trre-Chr7 2205550 2208548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00343 127 326 Acyl Lipid Metabolism Gene Families AT1G55840 27.014 1.11e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00343 - - gmx:100809944 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01746 13 14468640 14471018 Trre7g00343 7 2205550 2208548 PCT