Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g01746 ATGGAAGAAGATCAAGATCACTCTTCATCTTCCATGTCAATCCTCAGTACACCCTTAATACAAACTCCAAGACATCAACCTTCCCCTAAACCACAACACAAAAGAACCATAGTCACAACATTAATGGAAGCTGCAACTTTCACATCTTCTTCTTTCAAAGAAGACACTTATTACATTTCCAATCTCAAATCTTCAGAGAAAAAATCATTGCAAAATTTGAAGAAAAAGCTTTTATCTTCAGATGAAATCAGCCAAAATGCTTCCTTGTGGGGTGTTTCTTTGCTTAATGGTGATGATGGTAATGTTGGTGATGTGTTACTTTTGAAGTTCCTTAGAGCTAGAGACTTTAAAGTCAATGATGCATATAACATGCTTGTGAAATGTCTTGTTTGGAGGAAAGAATTTGGTGCTGAAAATATTGTGGATGAAGATTTAGGATTTAAAGAGCTTGAAGGTGTTGTAGCTTTTACTCATGGATTTGATAGAGAAGGACACCCTGTGTGTTACAATCATTATGGTGTGTTCAAAGATAAAGATATGTATGAGAGGATTTTTGGTGATGAAGAGAAGTTGAACAAGTTTTTAAGGTGGAGGGTTCAAGTTCTTGAGAAAGGAATCAAGCTTTTACATTTTAAACCTGGTGGTGTTAATTCTTTGATTCAAGTCACCGATCTTAAGGACATGCCTAAGAGAGAGTTAAGGGCTGTCTCAAAACAAATCCTTTCATTGTTTCAAGATAATTATCCTGAAATGGTTGCGCGTAAGATTTTCATCAATGTGCCATGGTATTTCAGCATGTTATATTCAATGTTCAGTCCATTTTTGACTCAAAGAACTAAGAGCAAGTTTGTGATATCTAAAGAAGGAAATTCTGCAGAAACACTCTATAAATTTATAAGGCCTGAGAATATTCCTGTTCAATATGGAGGATTGAGTCGACCTAATGATTTTCAAAATGGTCCCCCAAAACCAGCTTCTGAGTTCATTGTTAAAGGAGGAGAAAAAGTAAACATACAAATAGAAGGAATTGAGAGTGGTGCAACAATAAAGTGGGAGATTGTAGTTGGAGGCTGGGATTTGGAATACAGTGCTGAATTTGTACCAAATGCAGTAAGTAGCTACACTATTGAAGTTGAAAAAGCAAGGAAAGTTGATGCATCAGAAGAAGCAATTCAGAATTCATTCACATCAAAAGAAGCAGGCATAATAGTACTCTCAGTTGATAACTCTGCCTCTAGGAAGAAAAAAGTTGCCGCTTACCGCTATTTTCTCCGCAAATACAGCAACAATACACCATCTGATATGCAATTAAGCCTCAAATAG 1323 0.3613 MEEDQDHSSSSMSILSTPLIQTPRHQPSPKPQHKRTIVTTLMEAATFTSSSFKEDTYYISNLKSSEKKSLQNLKKKLLSSDEISQNASLWGVSLLNGDDGNVGDVLLLKFLRARDFKVNDAYNMLVKCLVWRKEFGAENIVDEDLGFKELEGVVAFTHGFDREGHPVCYNHYGVFKDKDMYERIFGDEEKLNKFLRWRVQVLEKGIKLLHFKPGGVNSLIQVTDLKDMPKRELRAVSKQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNSAETLYKFIRPENIPVQYGGLSRPNDFQNGPPKPASEFIVKGGEKVNIQIEGIESGATIKWEIVVGGWDLEYSAEFVPNAVSSYTIEVEKARKVDASEEAIQNSFTSKEAGIIVLSVDNSASRKKKVAAYRYFLRKYSNNTPSDMQLSLK 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g01746 440 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 143 316 IPR001251 -
Trre13g01746 440 SMART sec14_4 149 313 IPR001251 -
Trre13g01746 440 PANTHER PATELLIN-1 37 426 IPR044834 GO:0008289
Trre13g01746 440 ProSiteProfiles GOLD domain profile. 292 426 IPR009038 -
Trre13g01746 440 Pfam CRAL/TRIO domain 151 310 IPR001251 -
Trre13g01746 440 MobiDBLite consensus disorder prediction 1 34 - -
Trre13g01746 440 FunFam SEC14 cytosolic factor family protein 151 326 - -
Trre13g01746 440 SMART CRAL_TRIO_N_2 103 128 IPR011074 -
Trre13g01746 440 CDD SEC14 147 311 IPR001251 -
Trre13g01746 440 PRINTS Cellular retinaldehyde-binding protein signature 268 287 - -
Trre13g01746 440 PRINTS Cellular retinaldehyde-binding protein signature 235 256 - -
Trre13g01746 440 PRINTS Cellular retinaldehyde-binding protein signature 106 128 - -
Trre13g01746 440 Gene3D - 144 322 IPR036865 -
Trre13g01746 440 Pfam CRAL/TRIO, N-terminal domain 70 127 IPR011074 -
Trre13g01746 440 SUPERFAMILY CRAL/TRIO N-terminal domain 56 144 IPR036273 -
Trre13g01746 440 SUPERFAMILY CRAL/TRIO domain 148 314 IPR036865 -
Trre13g01746 440 Gene3D - 41 135 - -
Trre13g01746 440 Gene3D GOLD domain 323 423 - -
Trre13g01746 440 MobiDBLite consensus disorder prediction 8 34 - -
Trre13g01746 440 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 327 436 IPR036598 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g01746 Trre-Chr13 14468640 14471018 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g01746 107 305 Acyl Lipid Metabolism Gene Families AT1G55840 29.717 9.56e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g01746 - - psat:127127387 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01746 13 14468640 14471018 Trre13g01746 13 14468640 14471018 ECH
Trre13g01746 13 14468640 14471018 Trre7g00343 7 2205550 2208548 PCT