Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00287 ATGCCTCTCAGACTCGAAATCAAGCGAAAGCTTGCGCAAAGATCAGAAAGAGTAAAGTCTGTGGATCTACATCCAACAGAACCATGGATTCTAGCAAGTTTATACTCCGGGACTGTCTGTATCTGGAATTACCAATCTCAGACCATGGCTAAGTCTTTTGAGGTTACTGAGTTACCTGTTAGGTCCGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCGGGAGCTGATGATATGTTTATACGTGTATATAATTACAACACAATGGATAAAGTTAAAGTGTTTGAGGCACACACAGATTACATTAGGTGTGTGGCTGTTCATCCCACCCTTCCCTATGTGCTATCATCGTCTGACGATATGCTCATAAAGCTTTGGGATTGGGAAAAAGGCTGGATCTGTACCCAGATATATGAGGGACATTCTCATTATGTCATGCAAGTGACATTCAACCCTAAAGATACAAACACCTTTGCCAGTGCATCTCTTGATCGGACCATAAAGATTTGGAATCTTGGTTCTCCTGACCCAAATTTTACGTTGGATGCCCATCAAAAAGGAGTGAATTGCGTTGATTACTTTACTGGTGGTGACAAACCTTATCTAATTACTGGTTCTGATGATCACACTGCCAAGGTATGGGATTATCAGACCAAAAGTTGTGTCCAGACTTTAGATGGTCACACTCACAATGTATCTGCTGTATGCTTTCATCCTGAACTTCCTATCATTATTACTGGTTCTGAGGATGGTACAGTCCGCATTTGGCATTCAACAACTTATAGGCTTGAGAACACATTGAATTATGGTCTCGAAAGAGTTTGGGCTATTGGATACCTGAAGGGTTCACGCCGGGTTGTGATTGGCTATGATGAAGGAACTATAATGGTTAAACTTGGTCGAGAAGAACCTGTAGCTAGCATGGACAGCAGTGGGAAGATCATTTGGGCTAAGCACAACGAGATTCAAACTGTCAATATAAGGAGTGTAGGAGCAGATGCGGAGATTGCTGATGGAGAAAGGTTACCATTGGCTGTTAAGGAGTTGGGCACCTGTGATCTCTATCCACAAAGTTTAAGGCACAATCCAAATGGGAGGTTTGTTGTTGTTTGTGGGGATGGTGAGTATATTATATATACTGCCTTGGCATGGAGAAATAGGTCATTTGGCTCAGCACTGGAAATTGTTTGGTCTTCGGATGGAGAGTATGCTGTAAGAGAAAGTACTTCAAAGATTAAAATTTTCAGCAAAACTTTCCAGGAAAAGAAAAGTATCCGACCGACTTTTTCAGCAGAACGAATATTTGGTGGCACTGTATTGGCAATGTGCTCAAATGATTTCATCTGCTTTTATGATTGGGCTGAATGCAGATTGATTAGGCGCATTGATGTGAATGTGAAAAACCTCTACTGGGCTGATAGCGGCGATCTAGTGGCGATTTCTAGTGATACATCATTTTACATTCTAAAGTACAATCGTGATGTTGTTTCATCATATTTAGATAGTGGGAGCTCTGTGGATGAGCAAGGTGTTGAAGATGCCTTTGAGCTCCTTCATGAAATGAGTGAACGTGTCAGGACAGGGGTCTGGGTTGGAGATTGTTTTATCTACACCAATTCTTCATGGAGGCTTAATTACTGTGTTGGTGGCGAGGTAACAACAATGTTTCACTTGGACCGTCCAATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAGGGTTTATTTGATTGACAAAGAATTCAATATTGTGGGCTACACACTGCTTTTAAGCTTAATTGAGTACAAGACTCTTGTGATGCGTGGTGATTTGGAAAGGGCTAATGAAATTCTGCCATCAATTCCAAAAGAGCATCATAACAGCGTGGCTCATTTCCTGGAATCACGAGGCATGATAGAAGATGCTCTTGAAGTTGCTACTGACCCTGAGTACAGATTTGATCTAGCCATACAGCTCGGAAGATTAGAGGTTGCAAAGGCTATTGCTATAGAAGTGAAGAGTGAGTCCAAATGGAAGCAGTTGGGAGAATTGGCTATGTCTACTGGCAAGTTAGACATGGCTGAAGAGTGTTTAAAACATGCAATGGATTTGAGTGGATTGTTGCTTCTATATTCTTCTTTAGGAGATGCTGAAGGAATATCAAAACTTGCAACTCTTGCTAAAGAGCAAGGGAAGAACAATGTTGCTTTCCTTTGCCTATTTATGTTGGGTAAACTTGAAGACTGCCTTCAATTGTTAGTAGAAAGCAATCGGATTCCAGAGGCTGCCTTGATGGCCCGATCATACCTTCCAAGCAAGGTCTCAGAAATAGTGGCAATATGGAGAAAAGATCTCAGCAAGGTTAATCCCAAAGCTGCTGAATCTTTGGCTGATCCCGAGGAGTATCCTAATTTGTTTGAAGATTGGCAAGTTGCACTCGCTGTTGAATCTAAAGCTGCAGAAACCAGGGGTGTTTACCATCCTGCAGAGGAGTACGTTAACCACGCTGGTAAATCACATGTCACCCTTGTTGATGCTTTCAGAAATATGCAGATTGAAGAAGGGGATCAACCTCTTGAGAATGGGGACTATAATCATGAGTTGATTGAACAAAATGGAGATGAGGATTATACAGAGGAGCATGAAGAACAAAATGGTGAAGATTATACTGATGAGCAGGTAGAACAAAATGGAGAGGAAGGAAGCCAAGAAGATTCTACTGATGGTGCAGTTCTCGTTAATGGTAACGAAGCTGATGAAGAGTTGAGTACAAATAAAGAAGGAGCCCCGTCAGCGTAA 2778 0.4183 MPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWICTQIYEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKGSRRVVIGYDEGTIMVKLGREEPVASMDSSGKIIWAKHNEIQTVNIRSVGADAEIADGERLPLAVKELGTCDLYPQSLRHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEIVWSSDGEYAVRESTSKIKIFSKTFQEKKSIRPTFSAERIFGGTVLAMCSNDFICFYDWAECRLIRRIDVNVKNLYWADSGDLVAISSDTSFYILKYNRDVVSSYLDSGSSVDEQGVEDAFELLHEMSERVRTGVWVGDCFIYTNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNIVGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVAHFLESRGMIEDALEVATDPEYRFDLAIQLGRLEVAKAIAIEVKSESKWKQLGELAMSTGKLDMAEECLKHAMDLSGLLLLYSSLGDAEGISKLATLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLSKVNPKAAESLADPEEYPNLFEDWQVALAVESKAAETRGVYHPAEEYVNHAGKSHVTLVDAFRNMQIEEGDQPLENGDYNHELIEQNGDEDYTEEHEEQNGEDYTDEQVEQNGEEGSQEDSTDGAVLVNGNEADEELSTNKEGAPSA 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00287 925 ProSiteProfiles Trp-Asp (WD) repeats profile. 181 224 IPR001680 GO:0005515
Trre7g00287 925 Gene3D - 590 798 - -
Trre7g00287 925 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Trre7g00287 925 MobiDBLite consensus disorder prediction 866 925 - -
Trre7g00287 925 SUPERFAMILY WD40 repeat-like 3 297 IPR036322 GO:0005515
Trre7g00287 925 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Trre7g00287 925 PRINTS G protein beta WD-40 repeat signature 158 172 IPR020472 -
Trre7g00287 925 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Trre7g00287 925 Pfam Coatomer WD associated region 319 763 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Trre7g00287 925 PIRSF Beta'-COP 2 901 IPR016453 -
Trre7g00287 925 ProSiteProfiles Trp-Asp (WD) repeats profile. 138 180 IPR001680 GO:0005515
Trre7g00287 925 CDD WD40 17 297 - -
Trre7g00287 925 MobiDBLite consensus disorder prediction 866 895 - -
Trre7g00287 925 SUPERFAMILY NHL repeat 221 492 - -
Trre7g00287 925 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 138 172 - -
Trre7g00287 925 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Trre7g00287 925 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 181 218 - -
Trre7g00287 925 SMART WD40_4 174 215 IPR001680 GO:0005515
Trre7g00287 925 SMART WD40_4 218 257 IPR001680 GO:0005515
Trre7g00287 925 SMART WD40_4 131 171 IPR001680 GO:0005515
Trre7g00287 925 SMART WD40_4 4 43 IPR001680 GO:0005515
Trre7g00287 925 SMART WD40_4 46 85 IPR001680 GO:0005515
Trre7g00287 925 SMART WD40_4 88 127 IPR001680 GO:0005515
Trre7g00287 925 FunFam Coatomer subunit beta 11 300 - -
Trre7g00287 925 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Trre7g00287 925 Pfam WD domain, G-beta repeat 91 127 IPR001680 GO:0005515
Trre7g00287 925 Pfam WD domain, G-beta repeat 134 171 IPR001680 GO:0005515
Trre7g00287 925 Pfam WD domain, G-beta repeat 177 215 IPR001680 GO:0005515
Trre7g00287 925 CDD Coatomer_WDAD_beta-like 304 779 - -
Trre7g00287 925 Gene3D - 11 300 IPR015943 GO:0005515
Trre7g00287 925 PANTHER COATOMER 5 313 - -
Trre7g00287 925 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 266 IPR001680 GO:0005515
Trre7g00287 925 FunFam Coatomer subunit beta 590 798 - -
Trre7g00287 925 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00287 Trre-Chr7 1915839 1926339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00287 15 350 Miscellaneous Gene Families AT5G08390 18.950 1.88e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00287 K17302 - gmx:100797508 1742.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g00287 7 1915839 1926339 Trre7g00287 7 1915839 1926339 ECH
Trre11g04777 11 59049734 59059912 Trre7g00287 7 1915839 1926339 PCT