Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04777 ATGGTAATCATCTTCTCCGATCTGTTCATTATCAATCATTCTGCATTCTTAATAACCTTAGATCTGAACCAAATTCGAATCGATTTCAATGTTTCATTCCCTCTCAGACTCGAAATCAAGCGAAAGCTTGCGCAGAGATCAGAAAGAGTGAAATGTGTGGATCTACATCCAACAGAACCATGGATTCTGGCAAGTTTATACTCTGGAACAGTCTGTATCTGGAACTACCAATCTCAGACCATGGCCAAATCTTTCGAGGTCACTGAGTTACCAGTTAGATCAGCCAAGTTTGTTGCACGCAAACAGTGGGTTGTTGCTGGAGCTGATGATATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTCAAAGTATTTGAAGCACATACAGATTACATTAGGTGCGTGGCAGTTCATCCCACCCTTCCTTATGTTCTGTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAAAAAGGCTGGATTTGTACCCAGATATTTGAAGGACATTCTCATTATGTTATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCGTCTCTTGATCGCACTATAAAGATTTGGAATCTTGGCTCTCCGGATCCTAATTTTACATTGGATGCTCACCAGAAAGGAGTGAATTGCGTTGATTACTTTACAGGCGGTGACAAACCTTATCTAATCACCGGTTCTGACGATCACACTGCAAAGGTGTGGGATTATCAGACTAAAAGTTGTGTCCAGACCCTGGATGGTCACACACACAATGTTTCTGCTGTATGCTTTCACCCTGAACTTCCTATAATCATTACTGGTTCTGAGGATGGTACAGTGCGCATATGGCACTCAACAACTTATAGGCTTGAGAATACATTGAACTATGGTCTTGAAAGAGTTTGGGCTATTGGATACATGAAGAGTTCACGTCGGGTTGTGATTGGATACGATGAAGGAACAATTATGGTCAAACTTGGTCGAGAAGTACCTGTAGCTAGCATGGACAACAGTGGAAAAATTATTTGGGCTAAACATAATGAAATTCAGACTGTCAATATAAAGAGCATAGGAGCAGATTTGGAGGTTGCCGATGGTGAAAGGTTGCCTTTGGCTGTTAAGGAGCTGGGCACTTGCGATCTTTACCCACAAAACTTAAAGCACAATCCTAATGGAAGGTTCGTTGTTGTATGTGGAGATGGTGAGTATATTATATACACTGCATTGGCATGGAGAAATAGGTCATTTGGTTCAGCACTAGAGTTTGCTTGGTCTACGGATGGAGAATATGCTGTCAGAGAAAGTACTTCAAAAATTAAAATTTTCAGCAAAAGTTTCCAGGAAAAGAAGAGTGTCCGACCAACATTTTCAGCCGAACGAATCTTTGGTGGCACTTTACTGGCAATATGTTCAAATGATTTCATCTGTTTTTATGATTGGGCTGAATGCAGGTTGATTTACCGCATTGATGTCAATGTTAAAAACCTCTACTGGGCTGATAGTGGCGACCTAGTAACAATTGCTAGTGATACATCATTCTACATCCTGAAGTACAATCGTGATGTTGTTGCATCACATATAGATAGTGGTAGACCCGTAGATGAGGAAGGTGTTGAAGATGCTTTTGAGCTTCTTCATGAAATGAATGAACGTGTAAGGACAGGTATCTGGGTTGGGGATTGCTTTATCTACAACAATTCCTCTTGGAGACTTAATTACTGTGTTGGCGGAGAGGTGACTACAATGTTCCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGGGTGTTTTTGATTGACAAAGAATTTAATGTTGTGGGATACACACTGCTTTTGAGTTTGATTGAGTACAAAACACTTGTGATGCGCGGTGATTTGGAAAGGGCTAATGAAGTTCTACCATCAATTCCTAAAGAGCATCATAACAGTGTTGCTCGATTCCTGGAATCACGGGGGATGATAGAGGATGCTCTTGAAGTAGCTACAGACCCTGACTACAGATTTGATCTAGCAATACAGCTTGGGAGATTAGAAGTTGCAAAGGGCATTGCACTAGAGGTGCAGAGTGAGTCTAAATGGAAGCAGCTGGGAGAATTAGCTATGTCTTCTGGAAAGTTACAAATGGCCGAGGAATGTTTGAATCATGCAATGGATTTGAGTGGGTTGTTACTGCTATATTCTTCTTTCGGAGATGCTGAAGGAATTTCAAAACTTGCTACCCTTGCTAAGGAGCAAGGGAAGAACAATGTTGCATTCCTTTGCTTATTTATGTTGGGTAAACTTGAAGACTGCCTTCAACTATTGATAGAAAGTAATCGAATTCCAGAGGCAGCTTTAATGGCTCGATCTTATCTCCCAAGTAAGGTCCCAGAGATAGTGGCAATTTGGAGAAAAGATCTCAATAAGGTTAATCCAAAAGCTGCTGAATCATTGGCTGATCCTGAGGAATATCCAAATTTGTTTGAAGACTGGCAGGTTGCACTTGCTGTTGAATCTAAAGCTGCAGAAACAATGAATGTTTACCCTCCAGCAGAGCAGTACATCAACCATGCTGACAAACCACATATTACCCTTGTTGAAGCTTTCAGAAACATGCAGATTGAAGAGGAGGAGCCTCTTGAGAATGGAGACTCTAATCATGAGTTGACTGAACAAAATGAAGAACACTACACGGAAGAACACTATACGGAAGAACATAATGGAGAAGAAGGAAGCCAAGAAGAGGCTGTTGTAGTGGATGCCGAATCAACAGATGGTGCGGTACTCGTCAACGGTAACGAGGCTGACGAAGAGTGGGTGCTTGCACCACATCACTAG 2847 0.4131 MVIIFSDLFIINHSAFLITLDLNQIRIDFNVSFPLRLEIKRKLAQRSERVKCVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFVARKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYMKSSRRVVIGYDEGTIMVKLGREVPVASMDNSGKIIWAKHNEIQTVNIKSIGADLEVADGERLPLAVKELGTCDLYPQNLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFAWSTDGEYAVRESTSKIKIFSKSFQEKKSVRPTFSAERIFGGTLLAICSNDFICFYDWAECRLIYRIDVNVKNLYWADSGDLVTIASDTSFYILKYNRDVVASHIDSGRPVDEEGVEDAFELLHEMNERVRTGIWVGDCFIYNNSSWRLNYCVGGEVTTMFHLDRPMYLLGYLANQSRVFLIDKEFNVVGYTLLLSLIEYKTLVMRGDLERANEVLPSIPKEHHNSVARFLESRGMIEDALEVATDPDYRFDLAIQLGRLEVAKGIALEVQSESKWKQLGELAMSSGKLQMAEECLNHAMDLSGLLLLYSSFGDAEGISKLATLAKEQGKNNVAFLCLFMLGKLEDCLQLLIESNRIPEAALMARSYLPSKVPEIVAIWRKDLNKVNPKAAESLADPEEYPNLFEDWQVALAVESKAAETMNVYPPAEQYINHADKPHITLVEAFRNMQIEEEEPLENGDSNHELTEQNEEHYTEEHYTEEHNGEEGSQEEAVVVDAESTDGAVLVNGNEADEEWVLAPHH 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04777 948 Pfam WD domain, G-beta repeat 252 288 IPR001680 GO:0005515
Trre11g04777 948 Pfam WD domain, G-beta repeat 50 75 IPR001680 GO:0005515
Trre11g04777 948 Pfam WD domain, G-beta repeat 166 203 IPR001680 GO:0005515
Trre11g04777 948 Pfam WD domain, G-beta repeat 123 159 IPR001680 GO:0005515
Trre11g04777 948 Pfam WD domain, G-beta repeat 209 247 IPR001680 GO:0005515
Trre11g04777 948 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 127 159 - -
Trre11g04777 948 ProSiteProfiles Trp-Asp (WD) repeats profile. 170 212 IPR001680 GO:0005515
Trre11g04777 948 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 170 204 - -
Trre11g04777 948 ProSiteProfiles Trp-Asp (WD) repeats profile. 213 256 IPR001680 GO:0005515
Trre11g04777 948 FunFam Coatomer subunit beta 622 830 - -
Trre11g04777 948 MobiDBLite consensus disorder prediction 897 916 - -
Trre11g04777 948 FunFam Coatomer subunit beta 43 332 - -
Trre11g04777 948 Gene3D - 43 332 IPR015943 GO:0005515
Trre11g04777 948 PANTHER COATOMER 37 345 - -
Trre11g04777 948 SUPERFAMILY WD40 repeat-like 259 526 IPR036322 GO:0005515
Trre11g04777 948 MobiDBLite consensus disorder prediction 897 923 - -
Trre11g04777 948 CDD WD40 49 329 - -
Trre11g04777 948 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 257 288 - -
Trre11g04777 948 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 213 250 - -
Trre11g04777 948 PIRSF Beta'-COP 34 921 IPR016453 -
Trre11g04777 948 SUPERFAMILY WD40 repeat-like 34 329 IPR036322 GO:0005515
Trre11g04777 948 CDD Coatomer_WDAD_beta-like 336 811 - -
Trre11g04777 948 Gene3D - 622 830 - -
Trre11g04777 948 ProSiteProfiles Trp-Asp (WD) repeats profile. 127 159 IPR001680 GO:0005515
Trre11g04777 948 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 298 IPR001680 GO:0005515
Trre11g04777 948 SMART WD40_4 206 247 IPR001680 GO:0005515
Trre11g04777 948 SMART WD40_4 78 117 IPR001680 GO:0005515
Trre11g04777 948 SMART WD40_4 250 289 IPR001680 GO:0005515
Trre11g04777 948 SMART WD40_4 36 75 IPR001680 GO:0005515
Trre11g04777 948 SMART WD40_4 163 203 IPR001680 GO:0005515
Trre11g04777 948 SMART WD40_4 120 159 IPR001680 GO:0005515
Trre11g04777 948 Pfam Coatomer WD associated region 351 795 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Trre11g04777 948 PRINTS G protein beta WD-40 repeat signature 234 248 IPR020472 -
Trre11g04777 948 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Trre11g04777 948 PRINTS G protein beta WD-40 repeat signature 276 290 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04777 Trre-Chr11 59049734 59059912 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04777 83 324 Miscellaneous Gene Families AT5G08390 24.597 1.75e-18 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04777 K17302 - gmx:100815780 1731.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04777 11 59049734 59059912 Trre11g04777 11 59049734 59059912 ECH
Trre11g04777 11 59049734 59059912 Trre7g00287 7 1915839 1926339 PCT