Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00280 ATGGAGCTTATTTCGGGTCTACCCGAAGATGTGGCCCGAGACTGTTTAATTCGGGTTTCATACCAACAGTTTCCTACGGTGGCGGCGGTTTGTAAAGGGTGGAAGACGGAGATACATACGCCGGAGTACCACCGTCAACGGCGGAGGACAGGACAAGCTCAGAAAGTTCTAGTGATGGTTCAAGCACGGGTTGAAACGGAGAAAACAGAAACCGGTTCGACAAAAAGATTAACAAACCCGGTTTATCGGCTCAGTGTGTTTGAACCAGAAAAAGGTTTTTGGAGTGAATTACCGGCTCCACCCGGTTATGATTCTGGTTTACCGGTTATGTGTCAGTTAGCATGTGTTGGTTATGATCTTGTTGTATTGGGTGGGTTAGATCCGTATACATGGAAAGCATCGAATTCAGTGTTTGTTTATAACTTCTTGTCGGCGAAATGGCGCCGTGGGACCCACATGCCAGGTGGACCTCGCATATTTTTCGCTTGTTCATCGGATAATCGCCGGACAATTTTTGTTGCCGGCGGTCATGATGATGAAAAAAATGCGTTGAGGTCCGCCTTGGCGTATGATGTGGTGGATGATAAATGGGTTGAGTTGCCCGACATGTCGTCGGAGCGTGATGAGTGTAAGGCGGTGTTCCGCCGTGGGAAGTTCATTGTAGTCGGTGGTTACACGACGGAGAATCAAGGAAGGTTTGAGAGAAATGCGGAAGCGTTTGATTTTATGACGTGGAAGTGGGGTCAAGTTGAGGAAGAGTTTTTGGATTGTGCCACGTGTCCAATGACTTTGGTGGACGGTGGTGATGATGATGAAAGTGTTTATATGTGTTACGGCGGTGATTTAGTTGCGATGCGGGGTCACACGTGGCAGAGGATGGGTAAGATTCCTGATGAGATACGCAACGTGGCATATGTTGGAGCGTATGATGGAGTTGTGATTGTGATTGGATCAAGTGGCTATGGTGAAGTGCACATGGGTTATGCTTTTGATGTGAAAAAGAGTAATAATAATTGGAGAAAATTGGATTGTCCAGATGGATTTAAGGGACATGTCCAAACCGGTTGTGTTTTAGAAATTTAG 1083 0.4654 MELISGLPEDVARDCLIRVSYQQFPTVAAVCKGWKTEIHTPEYHRQRRRTGQAQKVLVMVQARVETEKTETGSTKRLTNPVYRLSVFEPEKGFWSELPAPPGYDSGLPVMCQLACVGYDLVVLGGLDPYTWKASNSVFVYNFLSAKWRRGTHMPGGPRIFFACSSDNRRTIFVAGGHDDEKNALRSALAYDVVDDKWVELPDMSSERDECKAVFRRGKFIVVGGYTTENQGRFERNAEAFDFMTWKWGQVEEEFLDCATCPMTLVDGGDDDESVYMCYGGDLVAMRGHTWQRMGKIPDEIRNVAYVGAYDGVVIVIGSSGYGEVHMGYAFDVKKSNNNWRKLDCPDGFKGHVQTGCVLEI 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00280 360 SMART kelc_smart 119 167 IPR006652 GO:0005515
Trre7g00280 360 SMART kelc_smart 170 217 IPR006652 GO:0005515
Trre7g00280 360 SUPERFAMILY Kelch motif 79 335 IPR015915 GO:0005515
Trre7g00280 360 CDD F-box_AtAFR-like 3 47 - -
Trre7g00280 360 Pfam Kelch motif 113 154 IPR006652 GO:0005515
Trre7g00280 360 Pfam Kelch motif 170 204 IPR006652 GO:0005515
Trre7g00280 360 Gene3D - 11 285 IPR015915 GO:0005515
Trre7g00280 360 PANTHER OS02G0208700 PROTEIN 2 360 IPR044595 GO:0080037|GO:2000762
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00280 Trre-Chr7 1889009 1890091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00280 7 211 Miscellaneous Gene Families AT4G33900 25.000 1.61e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00280 - - gmx:100796602 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g00280 7 1889009 1890091 Trre7g00280 7 1889009 1890091 ECH
Trre11g04780 11 59073706 59074806 Trre7g00280 7 1889009 1890091 PCT