Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04780 ATGGAGTTGATTTCAGGTTTACCAGAAGACATAGCACGAGACTGTTTGATTCGTGTTTCATACCAGCAGTTTCCGGTGGTAGCCTCCGTGAGCAAAGGGTGGAACACGGAGATTCAGTTGCCGGAGTTTCACCGTGTAAGGAAGAGCACCGGACATGCTCAGAAAATCCTTGTCACGGTTCAGTCTGAATTTGATTCAGAAAAATGTAAAACCGGTTCACTCGTTAAGGCTATGACTATGACGAACCCGGTTTATAAATTGAACGTATTAGAAACTGAAACGGGTATTTGGAGCGAGTTACCAATGGGACCCGAATTAAGTGATGGGTTACCCTTATTTTGTCGGATAGCGGGTGTCGGGTATGATCTTGTTGTTATGGGTGGGTGGGCCCCAGATTCATGGAAAGCATCAAATTCGGTGTTTATCTATAACTTTTTATCTGCTAAGTGGCGTCGTGGGGCTGATATGCCTGGTGGCCCCTGCACATTTTTTTCTTGCGTGTCCGATCATCAACGTATGATCTACGTGGTGGGAGGACACGATGAGGAGAAAAATGCGTTGAGGTCAGCTTTTGTTTATGATGTGGTAAATGATGTGTGGGCACAACTTCCTGATATGGCGAGGGAGCGCGATGAGTGCAAAGCTGTGTTCTGTCGTAGTGTGAATGGCGCTGGCACAATTAGGGTGGTCGGTGGGTATTGTACAGAGATGCAAGGGCGGTTTGAAAGGAGTGCAGAGGAGTTCGATGTTGCCACGTGGAAGTGGGGTCCTGTGGAGGAGGAGTTTTTGGATGATGCCACGTGTCCGAGGACTTGTGTGGATGGTTGTGATGTGGAGGGGATAATGTACATGTGTCAGGGTGATGATGTGGTGTCATTCGAAGGTGACACGTGGCAGGTGGTGGCCAAAGTGCCTAGGGAGATAAGGAATGTTGCATGTATGGCAGCTTGGGAAGGGGCATTGTTGTTGATTGGGTCTAGTGGGTTTGGGGAGCCTTATATGGGCTTTGTGTTGGGCCTAAAGAGTGGTGTTTGGAGTAAACTTGAGAGCCCAGAAAACTACACTGGCCATGTTCAGTCTGGTTGCCTTTTAGAGATTTAG 1101 0.4805 MELISGLPEDIARDCLIRVSYQQFPVVASVSKGWNTEIQLPEFHRVRKSTGHAQKILVTVQSEFDSEKCKTGSLVKAMTMTNPVYKLNVLETETGIWSELPMGPELSDGLPLFCRIAGVGYDLVVMGGWAPDSWKASNSVFIYNFLSAKWRRGADMPGGPCTFFSCVSDHQRMIYVVGGHDEEKNALRSAFVYDVVNDVWAQLPDMARERDECKAVFCRSVNGAGTIRVVGGYCTEMQGRFERSAEEFDVATWKWGPVEEEFLDDATCPRTCVDGCDVEGIMYMCQGDDVVSFEGDTWQVVAKVPREIRNVACMAAWEGALLLIGSSGFGEPYMGFVLGLKSGVWSKLESPENYTGHVQSGCLLEI 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04780 366 CDD F-box_AtAFR-like 3 47 - -
Trre11g04780 366 SUPERFAMILY Kelch motif 82 332 IPR015915 GO:0005515
Trre11g04780 366 Pfam Kelch motif 115 157 IPR006652 GO:0005515
Trre11g04780 366 Pfam Kelch motif 173 206 IPR006652 GO:0005515
Trre11g04780 366 PANTHER OS02G0208700 PROTEIN 2 366 IPR044595 GO:0080037|GO:2000762
Trre11g04780 366 Pfam F-box domain 4 43 IPR001810 GO:0005515
Trre11g04780 366 SMART kelc_smart 173 220 IPR006652 GO:0005515
Trre11g04780 366 SMART kelc_smart 122 170 IPR006652 GO:0005515
Trre11g04780 366 Gene3D - 53 359 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04780 Trre-Chr11 59073706 59074806 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04780 - - tpra:123897168 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04780 11 59073706 59074806 Trre11g04780 11 59073706 59074806 ECH
Trre11g04780 11 59073706 59074806 Trre7g00280 7 1889009 1890091 PCT