Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00278 ATGGGTGCTTCACTGCCACCTAAAGAGGCCAACCTCTTCAAGCTTATTGTTAAATCATATGAAACTAAGCAGTATAAAAAGGGGATCAAGGCAGCTGATGCTATTTTGAAAAAATTTCCAGACCATGGAGAAACTTTATCAATGAAGGGTTTAACATTAAATTGCCTGGATCGTAAGTCTGAAGCATATGAACTTGTTCGTCAAGGATTGAAGAATGACCTTAAAAGTCATGTTTGCTGGCATGTTTTTGGTCTCCTTTATCGGTCAGACAGAGAATACAGGGAGGCAATCAAGTGCTACCGAAATGCATTGAGAATAGATCCTGACAATATTGAAATTCTGCGTGACTTATCACTCTTGCAGGCTCAAATGAGAGATTTATCTGGCTTTGTTGAGACTAGACAACAACTTTTGACACTTAAGCCAAATCATCGCATGAACTGGATTGGCTTTTCCGTTTCCCACCATTTAAACTCTAATCCGTCCAAGGCTGTGGAAATTTTGGAAGCATATGAAGGGACTTTAGAAAATGATCATCCTCCAGATAATGAACGGTGCGAGCATGGGGAAATGATTTTATATAAGATCTCTTTGTTAGAGGAATGCGGATTTCTTGATAGAGCTCTTGAAGAGTTGCGCCAAAAAGAAACAAAAATTGTTGATAAACTTGCAATTAAAGAACAAGAGGTTTCAGTTCTAGTGAAGCTTGGTCATTTAGAAGAAGCAGAAACGTTATACAGGATATTACTATCCATGAATCCTGATAATTATAGTTACTACGATGGTCTCCAAAAGTGTGTTGGATTATATTTAGAAGATGGGAAGTACTCTGCTGATCAAATAGATCAGTTAGTTTCGTTGTATGAAACACTTGGGCAGCAATATAAGTGGTCTTCTGCAGTTAAGAGAATACCCCTGGATTTTTTACAAGGTGACAAATTTCGAGAAGCAGCAGAAAGTTATATTAGGCCTCTCTTAACTAAGGGAGTTCCATCTCTGTTTTCTGATCTTTCTTCTTTGTACATTCATCCTGGGAAGGCAGACATTTTGGAACAAATTATTCTTGAGTTAGAGCATTCTATTAGGACATCAAGCCAATATCCTGGGAGCACGGAGAAAGAACCCCCTTCAACTCATTTATGGACTTTGTTTTTCTTGGCTCAGCATTATGACAGGCGCGGCCAATATGAGATTTCTCTTTCTAAAATCGACGAGGCTATAGAACACACACCTACCGTCATTGATCTATATTCTGCCAAGAGTCGGATATTGAAGCATGCTGGTGATTTGAATGCTGCTGCTGCATTTGCAGATGAAGCAAGGCGTATGGATCTTGCTGATCGTTATGTTAATAGTGAATGTGTTAAGCGCATGCTGCAGGCTGATCAGGTGGCTTTGGCAGAAAAAATAGCTGTGTTGTTCACAAAAGATGGGGATCAACATAATAACCTTCATGATATGCAATGCATGTGGTACGAGCTTGCCTCGGGTGAAAGCTTTTTCCGCCAGGGCAATCTTGGGCGGGCTCTCAAGAAATTTTTAGCTGTGGAGAAGCATCATGCTGATATTACAGAGGACCAATTTGATTTTCATTCATATTGCTTAAGGAAAATGACTTTGCGTACTTATGTTGAAATGCTTAAATTTCAAGACCAATTGCACTCACATGCATATTTTCATAAAGCCGCAGCAGGAGCTATCAGATCTTATATTAAGTTGCACGATTTCCCCCCAAAGTCTACAGCAGAGGAAGATGAGCATATGTCAAATTTGCTCCCTTCTCAGAAAAAGAAAATGCGACAAAAGCAAAGAAAGGCAGAAGCAAGAGCTAAAAAAGAGGCAGAAGAAAAGAATGAAGAGTTAAATTCTAGTGCGGTATCAAAGTCTGGGAAACGGAATGTAAAACCTGTTGATTCTGATCCACATGGGGAGAAGTTATTGCAGGTCGAGGATCCACTGTCCGAAGCTGTTAAATACTTGAAGTTGCTGCAGAAGAATTCACCCGATTCATTGGAAACACATTTGCTCTCTTTTGAATTATATACAAGGAAACGGAAAATTTTGCTTGCCTTTCAGGCTGTAAAGCAGTTACTGAGGTTGGATGCTGACCACCCTGATTCTCACCGTTGCTTGATTAAATTTTTCCATCAATTGGGATCCATGAGTACTCCTGTGACTGAAAGCGAGAAACTGATATGGAGTGTCTTAGAAGCTGAGCGCCCAACTATTAGTCAGCTGCACGAGAAATCTCTTTTTGACGCAAACAATGCATTCCTTGACAATCATAAAGATTCTTTGATGCATAGAGCAGCGTTTACGGAAATCTTGTACATTTTGGATTCTAACCAAAAGTCTGAGGCTGTCAAGTTGATTGAAGAGTCAGCAAATAATATTGTGCCAAGAAATGGAGCAATTGGGCCAATCGGAGAATGGAAACTTAAAGACTGTATTGCAGTTCACCAGCTTCTTGGAACAGTACTTGTTGACCAAGATGCGGCATTTAGGTGGAAAGTGCGTTGTGCAGAGTACTTCCCTTATTCAACGTACTTTGAGGGAAGGCACAGCTCTGCCTCTCCTAATTCAGCCTTCAACCAATTACGCAAGAACTCTGAAAAAGATAGTTCTAATCATTCAGTTGGTAATCAAAATGCGGTCTCCACCAACACATCAAACGGGAAAGCATTTGAAAATCTCACTATCTGA 2703 0.4003 MGASLPPKEANLFKLIVKSYETKQYKKGIKAADAILKKFPDHGETLSMKGLTLNCLDRKSEAYELVRQGLKNDLKSHVCWHVFGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLSGFVETRQQLLTLKPNHRMNWIGFSVSHHLNSNPSKAVEILEAYEGTLENDHPPDNERCEHGEMILYKISLLEECGFLDRALEELRQKETKIVDKLAIKEQEVSVLVKLGHLEEAETLYRILLSMNPDNYSYYDGLQKCVGLYLEDGKYSADQIDQLVSLYETLGQQYKWSSAVKRIPLDFLQGDKFREAAESYIRPLLTKGVPSLFSDLSSLYIHPGKADILEQIILELEHSIRTSSQYPGSTEKEPPSTHLWTLFFLAQHYDRRGQYEISLSKIDEAIEHTPTVIDLYSAKSRILKHAGDLNAAAAFADEARRMDLADRYVNSECVKRMLQADQVALAEKIAVLFTKDGDQHNNLHDMQCMWYELASGESFFRQGNLGRALKKFLAVEKHHADITEDQFDFHSYCLRKMTLRTYVEMLKFQDQLHSHAYFHKAAAGAIRSYIKLHDFPPKSTAEEDEHMSNLLPSQKKKMRQKQRKAEARAKKEAEEKNEELNSSAVSKSGKRNVKPVDSDPHGEKLLQVEDPLSEAVKYLKLLQKNSPDSLETHLLSFELYTRKRKILLAFQAVKQLLRLDADHPDSHRCLIKFFHQLGSMSTPVTESEKLIWSVLEAERPTISQLHEKSLFDANNAFLDNHKDSLMHRAAFTEILYILDSNQKSEAVKLIEESANNIVPRNGAIGPIGEWKLKDCIAVHQLLGTVLVDQDAAFRWKVRCAEYFPYSTYFEGRHSSASPNSAFNQLRKNSEKDSSNHSVGNQNAVSTNTSNGKAFENLTI 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00278 900 Coils Coil 596 631 - -
Trre7g00278 900 Gene3D - 2 503 - -
Trre7g00278 900 MobiDBLite consensus disorder prediction 854 890 - -
Trre7g00278 900 Pfam N-terminal acetyltransferase A, auxiliary subunit 187 696 IPR021183 -
Trre7g00278 900 SUPERFAMILY TPR-like 21 263 IPR011990 GO:0005515
Trre7g00278 900 SMART tpr_5 380 413 IPR019734 GO:0005515
Trre7g00278 900 SMART tpr_5 43 76 IPR019734 GO:0005515
Trre7g00278 900 SMART tpr_5 77 110 IPR019734 GO:0005515
Trre7g00278 900 MobiDBLite consensus disorder prediction 579 644 - -
Trre7g00278 900 Gene3D - 505 725 - -
Trre7g00278 900 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Trre7g00278 900 MobiDBLite consensus disorder prediction 579 593 - -
Trre7g00278 900 SUPERFAMILY TPR-like 233 454 IPR011990 GO:0005515
Trre7g00278 900 PIRSF NAT_A 1 818 IPR021183 -
Trre7g00278 900 MobiDBLite consensus disorder prediction 606 622 - -
Trre7g00278 900 FunFam N-terminal acetyltransferase A, auxiliary subunit 2 503 - -
Trre7g00278 900 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 1 826 - -
Trre7g00278 900 FunFam N-terminal acetyltransferase catalytic subunit (NAT1) 505 725 - -
Trre7g00278 900 Pfam TPR repeat 84 123 - -
Trre7g00278 900 Coils Coil 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00278 Trre-Chr7 1855188 1869490 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00278 K20792 - gmx:100820094 1560.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g00278 7 1855188 1869490 Trre7g00278 7 1855188 1869490 ECH
Trre11g04782 11 59096935 59108181 Trre7g00278 7 1855188 1869490 PCT