Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04782 ATGGGTGCTTCTCTTCCTCCTAAAGAGGCCAACCTCTTCAAACTCATTGTTAAATCCTATGAAACCAAACAGTACAAGAAGGGACTCAAAGCGGCGGATGCCATTTTGAAAAAGTTTCCAGATCATGGAGAAACTTTATCGATGAAGGGTTTGACATTAAATTGCATGGATCGTAAATCTGAAGCATACGAACTGGTTCGCCAAGGATTGAAGAATGATCTCAAGAGTCATGTGTGCTGGCATGTTTATGGTCTTCTCTATCGGTCCGACAGAGAGTACAGGGAAGCAATCAAGTGCTATCGAAATGCACTAAGGATAGATCCTGACAATATTGAAATTTTACGTGATCTATCTCTTTTACAGGCACAAATGCGAGATTTATCTGGCTTTGTTGAGACGCGGCAACAACTTCTGACTCTCAAGTCAAATCATCGCATGAACTGGATTGGATTTGCTGTTGCGCATCATTTGAACTCTAATGCATCAAAAGCTATTGAAATTCTGGAAGCATATGAAGGGACATTAGAAGAAGATTATCCTCCAGAAAATGAACGAATCGAGCACGGGGAAATGGTTTTATATAAGGTCTCTTTGTTAGAGGAATGTGGATTTTTTGAGAGAGCTTTTGAGGAGTTGCAGAAGAAGGAGCCAAAAATTGTTGATAAGCTTGGATATAAAGAACAAGAGGTTTCACTTTTAGTCAAGCTTGGTCGCTTAGAAGAAGCCGAGAAATTGTACCAAACATTGCTTTCCATGAATCCCGACAATTATAGATATTATGAAGGCCTTCAGCGATGTGTTGGGTTATATTCAGAAAATGGCAATTTTTCTCCCGATGAAATAGATCGGTTAGATACCTTGTACAAATCACTTCGGCAGCAATTTAAGTGGTCATCTGCTGTCAAGAGAATACCACTAGATTTTCTTCAAGGTGATAGATTTCGAGAAGCAGCAGATAATTATATTAGGCCTCTCCTAACTAAGGGAGTTCCATCTCTATTCTCAGATCTCTCTTCATTATACAATCACCCTGGGAAGGCAGACATTTTGGAACAACTTATTCTTGAGTTAGAGAACTCTATTAGGACGACTGGTCGATACCCTGGGAGGGAGGAAAAAGAGCCCCCTTCAACTCTTATGTGGACGTTGTTCTTGTTGGCTCAGCATTATGACAGACGGGGCCAATATGAAATCTCACTTTCTAAAATCAATGAGGCTATAGAACACACTCCTACTGTCATTGATCTATACTCTGCCAAGAGTCGGATCCTGAAGCATGCTGGTGATTTGGCTGCTGCTGCTGCGTTTGCAGATGAAGCTAGGTGTATGGATCTTGGTGATCGTTATGTTAATAGTGAATGTGTGAAACGCATGCTGCAGGCTGATCAGATGGTTTTGGCAGAAAAAACTGCTGTGCTATTCACAAAAGATGGGGATCAACACAACAACCTCCATGACATGCAGTGCATGTGGTATGAGCTTGCCTCTGCTGAAAGCTGCTTCCGCCAAGGGGATCTTGGACTATCTCTGAAAAAATATTTAGCAGTGGAGAAGCATTATGCAGATATTACTGAAGACCAATTTGATTTTCATTCATACTGCTTAAGGAAAATGACATTGCGTACATATGTGGAAATGCTTCAATTTCAAGATAGATTGCATTCACATGCATATTTTCGTAAAGCAGCTGCTGGAGCTATCAGATGTTATATAAAATTGCACGATTCTCCTCCAAAGTCAACAGCTGAGGAGGATAGTGAAATGTCTAAGTTGCTTCCTGCTCAGAAAAAGAAATTGAAGCAAAAACAGAGAAAGGCAGAAGCAAGAGCTAAAAAAGAGGCAGAAGAGAAAAATGAAGAATCAAGTGCTAGTGGGACATCAAAGTCTGGGAAACGTCATGCAAAACCTGTTGATCCAGATCCTCGAGGGGAAAAGTTGTTGCAGGTTGAAGATCCATTGTTGGAAGCCACAAAATACTTGAAATTGCTGCAGAAGAATTCACCTGATTCTTTGGAGACACACTTGCTCTCCTTTGAATTATACATGAGAAAACAGAAGATTTTGCTTGCCTTCCAGGCTTTAAAACAATTACTGAAATTGGATGCTGAACACCCTGATTCTCATCGTTGCTTGATTAGATTCTTCCATAAAGTGGGATCCATGAATGCTCCCGTGACTGACAGTGAGAAACTCGTTTGGAGTGTCTTAGAAGCTGAACGCCAAACTATAAGTCAGCTGCATGGGAAATCTCTGCTCGAGGCAAATAACCTTTTCCTTGAAAAACATGAAGGTTCTTTGATGCATAGAGCTGCTGTTGGAGAAATGATGTACATTTTAGATCCCAATAGAAGATCTGAGGTTGTCAAGTTGATTGAAGGGTCAACAAATAACCCTGTGCCAAGAAATGGCGCACTTGGACCCATCCCGGAATGGAGACTTAAAGACTGTATTGCAGTTCATAAACTTCTTGGATCAGTCCTTGATGATCAGGATGCTGCATTGAGATGGAAAGTGCGATGTGCTGAGTTTTTCCCATACTCCACATACTTTGAAGGTAGTCAAAGCTCTGCCACACCCAACTCTGCTCTCAATAAAATATGCAAGACCGCTGTAAATGGGAGTTCTAGCCATTCACAGGGCGATCACGTTGTGGAACATGTCGCATCAAACGGCAAACTAGAAGCATTTAAAGATCTTACTATCTGA 2706 0.4113 MGASLPPKEANLFKLIVKSYETKQYKKGLKAADAILKKFPDHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLSGFVETRQQLLTLKSNHRMNWIGFAVAHHLNSNASKAIEILEAYEGTLEEDYPPENERIEHGEMVLYKVSLLEECGFFERAFEELQKKEPKIVDKLGYKEQEVSLLVKLGRLEEAEKLYQTLLSMNPDNYRYYEGLQRCVGLYSENGNFSPDEIDRLDTLYKSLRQQFKWSSAVKRIPLDFLQGDRFREAADNYIRPLLTKGVPSLFSDLSSLYNHPGKADILEQLILELENSIRTTGRYPGREEKEPPSTLMWTLFLLAQHYDRRGQYEISLSKINEAIEHTPTVIDLYSAKSRILKHAGDLAAAAAFADEARCMDLGDRYVNSECVKRMLQADQMVLAEKTAVLFTKDGDQHNNLHDMQCMWYELASAESCFRQGDLGLSLKKYLAVEKHYADITEDQFDFHSYCLRKMTLRTYVEMLQFQDRLHSHAYFRKAAAGAIRCYIKLHDSPPKSTAEEDSEMSKLLPAQKKKLKQKQRKAEARAKKEAEEKNEESSASGTSKSGKRHAKPVDPDPRGEKLLQVEDPLLEATKYLKLLQKNSPDSLETHLLSFELYMRKQKILLAFQALKQLLKLDAEHPDSHRCLIRFFHKVGSMNAPVTDSEKLVWSVLEAERQTISQLHGKSLLEANNLFLEKHEGSLMHRAAVGEMMYILDPNRRSEVVKLIEGSTNNPVPRNGALGPIPEWRLKDCIAVHKLLGSVLDDQDAALRWKVRCAEFFPYSTYFEGSQSSATPNSALNKICKTAVNGSSSHSQGDHVVEHVASNGKLEAFKDLTI 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04782 901 MobiDBLite consensus disorder prediction 577 594 - -
Trre11g04782 901 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 1 825 - -
Trre11g04782 901 FunFam N-terminal acetyltransferase catalytic subunit (NAT1) 505 725 - -
Trre11g04782 901 Gene3D - 505 725 - -
Trre11g04782 901 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Trre11g04782 901 Pfam TPR repeat 84 123 - -
Trre11g04782 901 Gene3D - 2 503 - -
Trre11g04782 901 SMART tpr_5 380 413 IPR019734 GO:0005515
Trre11g04782 901 SMART tpr_5 223 256 IPR019734 GO:0005515
Trre11g04782 901 SMART tpr_5 43 76 IPR019734 GO:0005515
Trre11g04782 901 SMART tpr_5 77 110 IPR019734 GO:0005515
Trre11g04782 901 MobiDBLite consensus disorder prediction 631 645 - -
Trre11g04782 901 FunFam N-terminal acetyltransferase A, auxiliary subunit 2 503 - -
Trre11g04782 901 MobiDBLite consensus disorder prediction 606 622 - -
Trre11g04782 901 Coils Coil 596 620 - -
Trre11g04782 901 PIRSF NAT_A 1 818 IPR021183 -
Trre11g04782 901 Pfam N-terminal acetyltransferase A, auxiliary subunit 186 696 IPR021183 -
Trre11g04782 901 SUPERFAMILY TPR-like 12 440 IPR011990 GO:0005515
Trre11g04782 901 MobiDBLite consensus disorder prediction 577 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04782 Trre-Chr11 59096935 59108181 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04782 K20792 - gmx:100776968 1544.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04782 11 59096935 59108181 Trre11g04782 11 59096935 59108181 ECH
Trre11g04782 11 59096935 59108181 Trre7g00278 7 1855188 1869490 PCT