LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre7g00246	ATGTTGCGAAGACTCGTCGCTTCACAGCTCAAAACCCTAACTTCTTCTTCTTCTTCATCACTCCGATCTCGTTCCCCCGCCGTTGCTGTTTCTCTATTCTCCCGCCAATTCACTGCTCAATCTGATGGCGGTAGTGCAATCAAAAAGAAGGTTGAGGATGTAGTGCCAATTGCTACCGGTCATGAGCGTGAGGAAATTCAGGCTGACCTTGAGGGTAGGAATATTCTTGAAATCGACCATCCTGAAGGTCCTTTCGGCACCAAGGAAGCACCTGCTGTTGTCAAATCCTACTATGATAAAAGGATAGTTGGATGCCCAGGTGGTGAAGGCGAGGATGAACATGATGTTGTCTGGTTTTGGCTGGAGAAAGACAAACCTCACGAATGTCCTGTGTGTGCACAGTATTTTGTGCTCGAAGTGGTAGGACCTGGTGGACCACCTTATGGACACGGCGATGATCATCATCACTAA	471	0.4798	MLRRLVASQLKTLTSSSSSSLRSRSPAVAVSLFSRQFTAQSDGGSAIKKKVEDVVPIATGHEREEIQADLEGRNILEIDHPEGPFGTKEAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKDKPHECPVCAQYFVLEVVGPGGPPYGHGDDHHH	156

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre7g00246	156	FunFam	Cytochrome c oxidase subunit Vb	47	141	-	-
	Trre7g00246	156	Pfam	Cytochrome c oxidase subunit Vb	57	144	IPR002124	GO:0005740\|GO:0005751\|GO:0006123
	Trre7g00246	156	CDD	Cyt_c_Oxidase_Vb	46	141	IPR002124	GO:0005740\|GO:0005751\|GO:0006123
	Trre7g00246	156	SUPERFAMILY	Rubredoxin-like	47	144	-	-
	Trre7g00246	156	ProSiteProfiles	Cytochrome c oxidase subunit Vb, zinc binding domain profile.	46	145	IPR002124	GO:0005740\|GO:0005751\|GO:0006123
	Trre7g00246	156	Gene3D	Cytochrome c oxidase, subunit Vb	47	141	IPR036972	GO:0005740\|GO:0005751\|GO:0006123
	Trre7g00246	156	PANTHER	CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL	1	155	IPR002124	GO:0005740\|GO:0005751\|GO:0006123

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre7g00246	Trre-Chr7	1656827	1660389	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre7g00246	K02265		-	gmx:100780886	229.18

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre7g00246	7	1656827	1660389	Trre11g04823	11	59370393	59373677	ECH
	Trre7g00246	7	1656827	1660389	Trre7g00246	7	1656827	1660389	ECH
	Trre11g04823	11	59370393	59373677	Trre7g00246	7	1656827	1660389	PCT