LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre11g04823	ATGTGGCGGAGACTCTTCACTTCTCCTCACCTCAAAACCCTATCTCCTCTCTCTCATTCTCATCCCCGATCCGCCGCCGTCTCTGGACTCCGATCCCTCGACCTCACCCGCCACGTCGCCACACAATCAGCTGGTTCGATCAAAAAGAGAGTTGAAGATGTAGTTCCAATTGCTACCGGTCATGAACGTGAGGAGATTCAGGCTGACCTTGAGGGAAGGAATATTCTTGAAATAGATCATCCTGAAGGTCCTTTTGGCACAAAGGAAACACCTGCTGTTGTTAGGGCTTTCTATGACAGAAGGATAGTTGGATGCCCGGGTGGTGAAGGCGAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAACCCCATGAATGTCCAGTGTGTGCACAATATTTTGAGCTTGAAGTGGTGGGACCTGGTGGTGATCCTTATGGACACCATTGA	456	0.5	MWRRLFTSPHLKTLSPLSHSHPRSAAVSGLRSLDLTRHVATQSAGSIKKRVEDVVPIATGHEREEIQADLEGRNILEIDHPEGPFGTKETPAVVRAFYDRRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCAQYFELEVVGPGGDPYGHH	151

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre11g04823	151	PANTHER	CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL	1	150	IPR002124	GO:0005740\|GO:0005751\|GO:0006123
	Trre11g04823	151	Gene3D	Cytochrome c oxidase, subunit Vb	47	141	IPR036972	GO:0005740\|GO:0005751\|GO:0006123
	Trre11g04823	151	ProSiteProfiles	Cytochrome c oxidase subunit Vb, zinc binding domain profile.	46	145	IPR002124	GO:0005740\|GO:0005751\|GO:0006123
	Trre11g04823	151	FunFam	Cytochrome c oxidase subunit Vb	47	141	-	-
	Trre11g04823	151	CDD	Cyt_c_Oxidase_Vb	48	143	IPR002124	GO:0005740\|GO:0005751\|GO:0006123
	Trre11g04823	151	SUPERFAMILY	Rubredoxin-like	47	144	-	-
	Trre11g04823	151	Pfam	Cytochrome c oxidase subunit Vb	57	147	IPR002124	GO:0005740\|GO:0005751\|GO:0006123

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre11g04823	Trre-Chr11	59370393	59373677	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre11g04823	K02265		-	gmx:100801050	234.187

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre7g00246	7	1656827	1660389	Trre11g04823	11	59370393	59373677	ECH
	Trre11g04823	11	59370393	59373677	Trre11g04823	11	59370393	59373677	ECH
	Trre11g04823	11	59370393	59373677	Trre7g00246	7	1656827	1660389	PCT