Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00225 ATGAAAGCCATGGAAGCTTTACACATGCGGTGTGTAATTCCACTATCTATGTCCAAAAATTCTCTCTTTACTCCCAAAACTACAACCCCATTATCTGCATTACCAATTTCAAAGCCACCATTGATTTTAACCTTATCATCATCATCATCATCTTCTCAAACTGCTACTGTAAGAACAAGAGCAGGTTGGTTTTCAGGTCTTACAGATAATAAGAAGAAGATGAATTTGCCTGATACTGTTAAAGCTGGTGACCCAGTTCTTCATGAACCTGCTCAAGAAATTGATCCTAGTGAGATAAAATCTGAGAAAGTACAGAAAATTATTGATGATATGATTAGGGTCATGAGGCAAGCTCCTGGTGTTGGTTTAGCTGCTCCTCAAATTGGAATTCCTTCTAGGATAATTGTTTTGGAAGATACCAAAGAATATATTAGTTATGCCCCAAAGGAAGAGATCAAAGCTCAAGATAGACGACCTTTTGATCTTTTGGTGATCGTGAATCCCAAGCTGAAGAATAAGAGCAACAAGACTGCCCTATTTTTTGAAGGGTGTTTGAGTGTCGATGGATTTAGAGCTGTGGTGGAGCGATACCTTGACGTTGAAGTTACGGGTTTGGATCGTAATGGTGCACCAATCAAAATAACTGCTTCTGGTTGGCAAGCCCGGATTTTACAACATGAATGTGATCACTTGGATGGAACTCTATATGTTGATAAGATGGCACCTAGAACTTTCAGAACCGTAGACAACTTGGACCTGCCTCTTGCCCAAGGATGCCCCAAACTTGGCCCTCGATAA 798 0.4035 MKAMEALHMRCVIPLSMSKNSLFTPKTTTPLSALPISKPPLILTLSSSSSSSQTATVRTRAGWFSGLTDNKKKMNLPDTVKAGDPVLHEPAQEIDPSEIKSEKVQKIIDDMIRVMRQAPGVGLAAPQIGIPSRIIVLEDTKEYISYAPKEEIKAQDRRPFDLLVIVNPKLKNKSNKTALFFEGCLSVDGFRAVVERYLDVEVTGLDRNGAPIKITASGWQARILQHECDHLDGTLYVDKMAPRTFRTVDNLDLPLAQGCPKLGPR 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00225 265 Hamap Peptide deformylase [def]. 75 251 IPR023635 GO:0042586
Trre7g00225 265 PANTHER PEPTIDE DEFORMYLASE 70 259 IPR023635 GO:0042586
Trre7g00225 265 CDD Pep_deformylase 80 236 IPR023635 GO:0042586
Trre7g00225 265 SUPERFAMILY Peptide deformylase 71 247 IPR036821 -
Trre7g00225 265 Pfam Polypeptide deformylase 80 243 IPR023635 GO:0042586
Trre7g00225 265 FunFam Peptide deformylase 76 259 - -
Trre7g00225 265 PRINTS Peptide deformylase signature 109 138 IPR023635 GO:0042586
Trre7g00225 265 PRINTS Peptide deformylase signature 194 212 IPR023635 GO:0042586
Trre7g00225 265 PRINTS Peptide deformylase signature 182 193 IPR023635 GO:0042586
Trre7g00225 265 PRINTS Peptide deformylase signature 213 242 IPR023635 GO:0042586
Trre7g00225 265 NCBIfam peptide deformylase 80 243 IPR023635 GO:0042586
Trre7g00225 265 Gene3D Peptide deformylase 74 264 IPR036821 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00225 Trre-Chr7 1559006 1561894 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00225 K01462 - gmx:100784292 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g00225 7 1559006 1561894 Trre7g00225 7 1559006 1561894 ECH
Trre11g04849 11 59514513 59516964 Trre7g00225 7 1559006 1561894 PCT