Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04849 ATGGAAGCGGCGCGGCGGCTGGTATCGCGTATGCGTGTGATTCCATTACCGGCGGCTATTGGCGCGGGGGACGGTGTAGCGTTGGCCGGTGGCGCATATGCGTGTGATTGTAGCTGTAACAGCAAAATTCCAGCATTGAATACCAAACATTTGAAGTTCAGCTCAGCATCATCATCATCATCATCATCACTATGGAGGAACAAAAGAGATCAGAAATTGCCCTTCATTGTAAAAGCCGGAGACCCAGTTCTTCATCAACCTGCACTTAACATTGATCCAACTGAGATTAAATCAGAAAAGATTCAGAAGATAATCGATGATATGATTCTTGTTATGAGAAAATCCCCTGGAGTTGGTCTCGCTGCTCCACAAATTGGAATCCCCTTTAGGATAATTGTTTTGGAGGATAAAGAAGAATATATTAGTTACAACACAGAAGAGGAGACCAAAGCACAAGACAGAAGACCTTTTGATCTTTTGGTGATTCTGAACCCCAAGCTAAAGAACAAGAGCAACAAGACTGCCTTCTTTTTTGAAGGGTGTTTGAGCGTTGATCGATTTCAAGCTGTGGTAGAGCGTTACCTTGATGTCGAGGTGTCAGGTTTTGATCGATATGGTGAGCCAATAAAAATAAATGCTTCTGGTTGGCAGGCTCGGATTTTACAGCATGAGTGCGATCATCTAGATGGAACACTATATGTTGATAAGATGGTACCTAAAACTTTCAGATATTGGAGAAACATGGATCTGCCTCTTGCCCATGGTTGCCCCAAACTAGGTCCCCGAGCCTAA 792 0.4381 MEAARRLVSRMRVIPLPAAIGAGDGVALAGGAYACDCSCNSKIPALNTKHLKFSSASSSSSSSLWRNKRDQKLPFIVKAGDPVLHQPALNIDPTEIKSEKIQKIIDDMILVMRKSPGVGLAAPQIGIPFRIIVLEDKEEYISYNTEEETKAQDRRPFDLLVILNPKLKNKSNKTAFFFEGCLSVDRFQAVVERYLDVEVSGFDRYGEPIKINASGWQARILQHECDHLDGTLYVDKMVPKTFRYWRNMDLPLAHGCPKLGPRA 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04849 263 FunFam Peptide deformylase 73 256 - -
Trre11g04849 263 CDD Pep_deformylase 76 233 IPR023635 GO:0042586
Trre11g04849 263 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Trre11g04849 263 NCBIfam peptide deformylase 80 239 IPR023635 GO:0042586
Trre11g04849 263 PANTHER PEPTIDE DEFORMYLASE 69 253 IPR023635 GO:0042586
Trre11g04849 263 SUPERFAMILY Peptide deformylase 74 246 IPR036821 -
Trre11g04849 263 Hamap Peptide deformylase [def]. 72 248 IPR023635 GO:0042586
Trre11g04849 263 PRINTS Peptide deformylase signature 106 135 IPR023635 GO:0042586
Trre11g04849 263 PRINTS Peptide deformylase signature 191 209 IPR023635 GO:0042586
Trre11g04849 263 PRINTS Peptide deformylase signature 179 190 IPR023635 GO:0042586
Trre11g04849 263 PRINTS Peptide deformylase signature 210 239 IPR023635 GO:0042586
Trre11g04849 263 Pfam Polypeptide deformylase 76 240 IPR023635 GO:0042586
Trre11g04849 263 Gene3D Peptide deformylase 72 261 IPR036821 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04849 Trre-Chr11 59514513 59516964 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04849 K01462 - csv:101216450 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04849 11 59514513 59516964 Trre11g04849 11 59514513 59516964 ECH
Trre11g04849 11 59514513 59516964 Trre7g00225 7 1559006 1561894 PCT