Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05450 ATGGAAGACGCCGGAAGTTATACGAACCCCGGCAACCTATCGCGCAAGGTCGTTGACATCGCTGCTGGTGAATCACACACTCTCCTTCTTACTGGAGATGGTAGTGTGTACACTTGGGGTAGAGGAATGTTTGGAAGGCTTGGTCTTGGTTCTGAAAAAGATGAACTTTTACCAGTAAAGCTCAACTTTGAAAACCCTAATGGAAATGGAACTGAAGACTCTGTCAAAATAGTAGGAATTGCTGCTGGTGCTTATCATAGTCTTGCTCTTGCAGACGATGGATCTGTTTGGTGCTGGGGTTACAATATATGTATCCTTAATATGCTTGAAGTTCCTTGA 339 0.4395 MEDAGSYTNPGNLSRKVVDIAAGESHTLLLTGDGSVYTWGRGMFGRLGLGSEKDELLPVKLNFENPNGNGTEDSVKIVGIAAGAYHSLALADDGSVWCWGYNICILNMLEVP 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05450 112 Pfam Regulator of chromosome condensation (RCC1) repeat 33 90 IPR000408 -
Trre5g05450 112 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 80 90 IPR000408 -
Trre5g05450 112 SUPERFAMILY RCC1/BLIP-II 14 104 IPR009091 -
Trre5g05450 112 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 34 93 IPR000408 -
Trre5g05450 112 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 15 101 - -
Trre5g05450 112 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 20 30 IPR000408 -
Trre5g05450 112 Gene3D - 3 105 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05450 Trre-Chr5 55173310 55174226 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05450 - - pcin:129294410 179.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05450 5 55173310 55174226 Trre5g05450 5 55173310 55174226 ECH
Trre5g05450 5 55173310 55174226 Trre1g00938 1 7105356 7107799 PCT