Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05380 ATGTCTACATCTTATCTTCCTGCCACAACAGATTCGATTGCTCAAGCATTGGAGGCCAAAAACCCTTCTGAAGCGATTGCCATTCTTTATCGCGTTCTTGATGATCCATCGTCTTCACCGGAAGCTCTGCGTATGAAAGAGCAGGCCATCACAAACCTTACTGACCTTCTCAGGCAAGAGAACAGGGGAGAGGATCTGCGCAGCCTTCTCACTTCATTGAGGCCCTTCTTCTCCTTGATTCCCAAAGCAAAAACTGCAAAGATTGTAAGGGGAATAATTGACTCGGTTGCTAAAATACCAGGGACATCTGATCTACAAATTTCACTCTGTAAAGAAATGGTGCAATGGACCCGTGCTGAAAAGCGTACTTTTCTGAGGCAACGAATTGAGGCAAGGCTTGCAGCACTTCTAATGGAAACTAAGGAGTATTCAGAAGCATTGACTCTTCTTTCTGGGTTGGTCAAAGAGGTTAGGAGATTGGATGACAAGCTTCTTCTTGTTGACATCGACTTGCTGGAAAGCAAACTGCACTTCTCATTAAGAAACCTTCCAAAAGCAAAAGCTGCCCTCACAGCGGCAAGAACAGCTGCAAATGCCATTTACGTACCGCCTGCTCAACAAGGGGCCATTGATCTTCAGAGTGGAATCCTTCATGCCGAGGAGAAGGATTACAAAACTGCATACAGCTATTTCTTTGAAGCCTTTGAATCGTTCAATGCTCTTGAAGACCCCAAGGCTATTTTCAGCCTGAAATATATGTTGCTGTGCAAGATCATGGTCAATCAAGCTGATGATGTTGGTGGAATTATTTCCTCTAAAGCGGGCTTGCAATATGTTGGACCTGACTTGGATGCTATGAAAGCTGTTGCTGATGCTCATTCTAAGCGATCTTTGAAGTTATTTGAAACTGCTTTGCAGCACTACAAGGCACAGTTGGAGGAAGACCCAATTGTCCACAGGCACCTTTCATCCTTGTATGATACCCTTCTGGAGCAGAATCTTTGTAGATTGATTGAGCCATTCTCAAGAGTTGAGATTGCACATATTGCTGAGCTTATTGAGCTTCCCATTGATCACGTTGAGCGGAAGATGTCTCAGATGATCTTGGACAAGAAGTTTGCTGGGACATTGGATCAAGGTGCTGGATGCCTCGTCATATTCGAGGATCCCAAGACTGATGCGATATATCCTGCAACTTTAGAGACCATTTCCAATGTTGGGAAAGTTGTCGACAGTCTTTATGTTAGGTCTGCCAAGATCATGGCATGA 1269 0.4437 MSTSYLPATTDSIAQALEAKNPSEAIAILYRVLDDPSSSPEALRMKEQAITNLTDLLRQENRGEDLRSLLTSLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQISLCKEMVQWTRAEKRTFLRQRIEARLAALLMETKEYSEALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALEDPKAIFSLKYMLLCKIMVNQADDVGGIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFETALQHYKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPIDHVERKMSQMILDKKFAGTLDQGAGCLVIFEDPKTDAIYPATLETISNVGKVVDSLYVRSAKIMA 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05380 422 Gene3D - 46 421 - -
Trre5g05380 422 Pfam PCI domain 285 386 IPR000717 -
Trre5g05380 422 SUPERFAMILY "Winged helix" DNA-binding domain 314 396 IPR036390 -
Trre5g05380 422 ProSiteProfiles PCI domain profile. 223 391 IPR000717 -
Trre5g05380 422 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 320 403 IPR000717 -
Trre5g05380 422 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 393 418 IPR040780 -
Trre5g05380 422 FunFam 26S proteasome non-ATPase regulatory subunit 11 46 421 - -
Trre5g05380 422 SUPERFAMILY TPR-like 123 323 IPR011990 GO:0005515
Trre5g05380 422 SMART PCI/PINT associated module 143 319 - -
Trre5g05380 422 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 14 129 IPR040773 -
Trre5g05380 422 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 16 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05380 Trre-Chr5 54507220 54508488 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05380 K03036 - gmx:100780845 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05380 5 54507220 54508488 Trre1g00846 1 6414531 6419394 PCT