Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00846 ATGTTTTCCTGCCGTGAAAGCTTGGAATTCCAGCTTCAACAAAACTCACGTTTGATTGAAGAATCACGGGCACTCTCGTTCTCCTTCCATCCAATCAAAAACTTTCTCCTAGCTATAGCCATGTCGTCTTCTTTCCTTCCTGCCACAACAGAGTCCATTGCTCAGGCATTGGAAGCTAAAGACCCATCTGAGGCCATCTCCATTCTTTATCGCATACTTGGTGATCCTTCTTCTTCTCCAGAAACACTGCGCATGAAAGAACAGGCCATCACAAATATTGCCGACCTGCTCAGGCAAGAGAATAGGGCAGAGGATCTGCGGAGCCTTCTCACTCAGTTGAGGCCATTCTTTTCCTTGATTAGTGCAATGGACACACATAGAAACTTGCTTGAAATCAAGCTACACTTCTCCCTAAGGAATCTTCCAAAAGCAAAAGCTGCCCTCACAGCTGCAAATGCTATTTATGTTCCACCAGCTCAGCAAGGTGCCATTGATTTGCAGAGTGGAATTCTTCATGCTGAAGAGAAAGATTATAAAACTGCACATAGTTCACAGGCACTTGTCATCCCTTTATGA 576 0.4462 MFSCRESLEFQLQQNSRLIEESRALSFSFHPIKNFLLAIAMSSSFLPATTESIAQALEAKDPSEAISILYRILGDPSSSPETLRMKEQAITNIADLLRQENRAEDLRSLLTQLRPFFSLISAMDTHRNLLEIKLHFSLRNLPKAKAALTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAHSSQALVIPL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00846 191 Coils Coil 86 106 - -
Trre1g00846 191 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 129 183 - -
Trre1g00846 191 Gene3D - 73 124 - -
Trre1g00846 191 Gene3D - 125 186 - -
Trre1g00846 191 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 54 121 IPR040773 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00846 Trre-Chr1 6414531 6419394 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00846 K03036 - twl:119993222 137.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05380 5 54507220 54508488 Trre1g00846 1 6414531 6419394 PCT