Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05329 ATGGCTGATGATAAAGTAGTTGAGGAAGGTGAAAAGAAGGAGACAAACACAAGTTCTACTGCTGCTGGGAATGAAAAGAAGAAGCGTAAAGGATTCATTTCTCGAATTTGGAATGGAATTTTTAGGTTACACGGCGATGATTTTGAGAAGCGCCTTCAATATATTTCTAAAGAGGAAGCTACGGTTATCGCTAGAATGACTAGGAGATCGCGATCCAGGAGGCATGTGTCCCGGAATCTTATTGTATTTTCTGTTATATTTGAGGTCATTGCTGTAGGTTATGCGATTATGACAACAAGATCAGTGGGTATAGATTGGAAAATGAGGGCAATCCGGGTTTTACCAATGTTTCTTTTGCCTGCACTATCAGCTGCTACTTATTCAGCATTTATCAGCTTCACAAGAATGTGTGATCACAGGGACCAGAATATTATTGAAAAGCTTCGTGCTGAAAGGCAAGCAAAAATTGACGAGCTCAAAGAAAAGACAAATTATTACACGACGCAACAGCTTATTCAGAGATATGACCCAGACCCAGCCGCAAAGGCAGCTGCTGCAACTGTTTTGGCGTCTAAATTGGGTGCAGATTCTGGTTTGAAATTGTACATGGGTGATGAATCCAATCTCGGTGGTGCTTCAACAGGGAAGAGCAATGATGTTGAACTTGTGCAGTCCTCTGGACTTAGAAATAGGAAACAAGTTCAAAGTAGATCCACTAGCCCAAGGACAACCGCACAAAATTTTGCTGATCAACAATTAGTAGGTTCGGGGGAATTCGTTCAGACCCAGATCTCTGAGTATGATCAACCTGTTGTTGTTGAACATCAACCTCAAAATTCAACCCCACAAGATGGAGGATGGATTGCAAGAATTGCAGCGTTACTTGTGGGTGAGGATCCAACGCAGTCTTATGCTCTCATATGCGGTAACTGCCACATGCATAATGGTCTTGCTCGGAAGGAGGATTTCCCATTTATCACTTACTACTGCCCACATTGCCATGCGCTGAACAAGCCAAAGCAATTGGATGGGAGTATCTCCAGTCTTCCTTCCCCTAAGGCGGGGTCCGTGCAAATGGATGAGGGTATCCTGGGTCTTCCTTCCCCTAAGGCGAGGTCTCCAAAAACAGGCGATGATGAGGCAGTTTTAAATGCTAGCACTTCTGCTGCAGAGAGCATAATCGCAAGCGACAGTCCCATAAATGCTATCCCTGAGATTGAAGAGGTATCAGAAAGGACAAGTTTAGAGGAGAAAATTGATTGA 1263 0.4363 MADDKVVEEGEKKETNTSSTAAGNEKKKRKGFISRIWNGIFRLHGDDFEKRLQYISKEEATVIARMTRRSRSRRHVSRNLIVFSVIFEVIAVGYAIMTTRSVGIDWKMRAIRVLPMFLLPALSAATYSAFISFTRMCDHRDQNIIEKLRAERQAKIDELKEKTNYYTTQQLIQRYDPDPAAKAAAATVLASKLGADSGLKLYMGDESNLGGASTGKSNDVELVQSSGLRNRKQVQSRSTSPRTTAQNFADQQLVGSGEFVQTQISEYDQPVVVEHQPQNSTPQDGGWIARIAALLVGEDPTQSYALICGNCHMHNGLARKEDFPFITYYCPHCHALNKPKQLDGSISSLPSPKAGSVQMDEGILGLPSPKARSPKTGDDEAVLNASTSAAESIIASDSPINAIPEIEEVSERTSLEEKID 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05329 420 MobiDBLite consensus disorder prediction 1 26 - -
Trre5g05329 420 MobiDBLite consensus disorder prediction 1 15 - -
Trre5g05329 420 Coils Coil 145 165 - -
Trre5g05329 420 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 287 337 IPR019273 -
Trre5g05329 420 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 26 389 IPR040115 GO:0071786
Trre5g05329 420 MobiDBLite consensus disorder prediction 350 380 - -
Trre5g05329 420 MobiDBLite consensus disorder prediction 400 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05329 Trre-Chr5 54138044 54140903 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05329 K23292 - gmx:100797087 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00784 1 5912796 5917986 Trre5g05329 5 54138044 54140903 PCT