Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00784 ATGGCCGAAGAGAAAGCGGTTACTACTGCCGATGGCGAGAAGAAAGAGAAGACGAATGACACGGTTACTACTACCACTAATACTAATGGAAACGGAAAGAAGAAGCGTAAAGGTTTCGTTTCGCGAATTTGGAATTTTGTATTTAGGTCTAATAAAGATGATTTTGAGAAGAGGCTTCAGTGTATTTCTAAGGAAGAAGCTTCTGTTTCGAGTAGAATGAACATCAGATCCCGTTCATGGAGGCGAACCTCTCGCCACATTATTATTTTTTCTATTTTATTTGAGGTCATTGCTGTAGCTTATGCGATTATGACAACAAGATCCGTATATATGAATTGGAAAATGAGGGCGATCCGAGTTTTGCCGATGTTTCTTTTGCCTGCCTTATCATATGCTACTTATTCAACATTTGTAAGCTTCATAAGGATGTGTGATCGCAGGGACCAGAAAATTCTTGATAGGCTGAGAGCTGAAAGGAAGGAAAAAATTGACGAGCTCAAAGAGAAGACAAATTATTACATTACTCAACAACTCATTCAGAAATATGACACAGACCCAGCCGCAAAAGCAGCTGCTGCAACTGTTTTGGCATCCAAGCTGGGTGCAGATTCGGGTTTGAAAGTGTATATGGAAGATAAATCTAAATCTGGTGCTCCAAAAGGAAAGCCAAACAATGTTGAACCTGTGCAGTCTAGTGGACTTCGAAATCGCAAACAAGGGCAAACTCAACCCACTAGTCTGGCGACAACTACCCCAAATCATCCTGATCAACAGTTGGTTGCTTCAGGGGGAGCTGCGCAAACTCAGGCTCGTGTGCAGAAACAGCTGGTAGTTGTTGAGCATCACCAACCTCAAAGCTCAACAAAGTATGATGGAGGTTTGGTTGCTCGAATCGCAGCATTGCTTGTGGGCGAAGATCCAATGCAGTCCTACGCACTCATATGTGGTAACTGCTATATGCATAATGGCCTTGCTCGGAGAGAGGAGTTCCCATTTATCACTTACTACTGCCCACACTGTCACGCCCTGAACAAACCAAAGCAATCGGATGAGCCCATCTCTGGTTTTAATTTGCCAAACACTGGTTCCCCAAAAACAGATGATGGAGAGGCAGTTAAAAATGCTAGTATAAGCTCTTCTGACAGCTTGGTCGGAAACATTAAACCTGTAGATGCTACCCCTGAGATTGAGCAAATATCTGAAGAAGCTACCCCTGAGATCAAGCGCATATCTGAAGAAGCTACCCCTGAGATTGAGCAAATATCTGAAGAAGCTACCCCTGAGGTCAAACACATATCTGAAGAAGCTATCCCTGAGGTTGAACACATATCTGAAGCTATCCCTGAGGTCGAGCACATATCTTAA 1365 0.4322 MAEEKAVTTADGEKKEKTNDTVTTTTNTNGNGKKKRKGFVSRIWNFVFRSNKDDFEKRLQCISKEEASVSSRMNIRSRSWRRTSRHIIIFSILFEVIAVAYAIMTTRSVYMNWKMRAIRVLPMFLLPALSYATYSTFVSFIRMCDRRDQKILDRLRAERKEKIDELKEKTNYYITQQLIQKYDTDPAAKAAAATVLASKLGADSGLKVYMEDKSKSGAPKGKPNNVEPVQSSGLRNRKQGQTQPTSLATTTPNHPDQQLVASGGAAQTQARVQKQLVVVEHHQPQSSTKYDGGLVARIAALLVGEDPMQSYALICGNCYMHNGLARREEFPFITYYCPHCHALNKPKQSDEPISGFNLPNTGSPKTDDGEAVKNASISSSDSLVGNIKPVDATPEIEQISEEATPEIKRISEEATPEIEQISEEATPEVKHISEEAIPEVEHISEAIPEVEHIS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00784 454 PANTHER ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK 33 430 IPR040115 GO:0071786
Trre1g00784 454 MobiDBLite consensus disorder prediction 403 429 - -
Trre1g00784 454 MobiDBLite consensus disorder prediction 351 371 - -
Trre1g00784 454 MobiDBLite consensus disorder prediction 1 20 - -
Trre1g00784 454 MobiDBLite consensus disorder prediction 213 266 - -
Trre1g00784 454 Coils Coil 152 172 - -
Trre1g00784 454 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 295 344 IPR019273 -
Trre1g00784 454 MobiDBLite consensus disorder prediction 1 35 - -
Trre1g00784 454 MobiDBLite consensus disorder prediction 225 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00784 Trre-Chr1 5912796 5917986 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00784 K23292 - gmx:100815496 549.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00784 1 5912796 5917986 Trre5g05329 5 54138044 54140903 PCT