Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05210 ATGGGTAGGAATAAAAATCAAATTTTTGATGACAAAAGAGATGGGTTTTTCTCAGTTTCAGATTTGGGGTTTCAATCTCATCATCATGAAGATTACTATTATCCTGGAGGTTTGTTTGCTAGCGTTGGTCAAATGGGAATAGGCTTTGGTGTTCAACAACCAAATCCTCCTGATTCTTCTCAAAATGGTGATGACCCTAAACTTCCTTTCAATGAATTATATGTTAAGTATATTCAATCACTCTGGAAATTTGAACCAAATGGGGTTAAGAATGTCAATGGGGAAGGGGAAGAAGTTGTTAAGGTGAAGAATAAAAATGGTGGGTTTAAACTCAAGATTAAGATAAGGAATCCTTCTATTAGGAGGTTGTGTAGTGGAGCAATTGCTGGGGCTATCTCTAGAACTACTGTGGCACCTTTGGAGACTATTAGGACTCATTTGATGGTTGGTAGTAGTGGTCATTCTACTACTGAGGTTTTTCAAGATATTATGAAAACTGATGGATGGAAGGGTTTGTTTAGGGGTAATCTTGTTAATGTCATTCGAGTTGCACCTAGCAAAGCCATTGAGCTATTTGCTTATGATACGGTAAACAAGAACCTTTCCGCAAAGCCTGGGGAGCAGTCCAAACTCCCAGTTCCTGCATCATTGATTGCAGGTGCTTGTGCTGGAGTGAGTTCAACTATATGCACGTATCCGCTTGAACTACTCAAGACTAGACTAACTATCCAGAGAGGTGTTTACAATGGTCTTGTTGATGCATTTGTGAAAATAATTAAAGAAGAGGGTCCTGCAGAACTTTACCGAGGCCTGACTCCTAGTCTTATTGGAGTTATTCCATATTCGGCTACCAATTACTTTGCCTACGATACTCTACGGAAAGCATACCGAAAATTTTTTAAACAAGAGAAGATTGGCAACATTGAAACCCTTTTGATTGGTTCAGCAGCCGGTGCTATTTCAAGTACTGCAACTTTTCCACTCGAGGTGGCTCGCAAGCATATGCAAGTCGGAGCTCTTAGTGGAAGACAGGTTTACAAAAATGTGGTTCATGCACTTGTTAGCATACTTGAACAAGAAGGGATCCTGGGTCTATATAGAGGGCTTGGACCTAGTTGCATGAAGTTAGTACCAGCCGCCGGAATCTCATTCATGTGTTATGAAGCATGCAAGAAGATATTGATAGATAACGATGAGGAGGAATAG 1206 0.403 MGRNKNQIFDDKRDGFFSVSDLGFQSHHHEDYYYPGGLFASVGQMGIGFGVQQPNPPDSSQNGDDPKLPFNELYVKYIQSLWKFEPNGVKNVNGEGEEVVKVKNKNGGFKLKIKIRNPSIRRLCSGAIAGAISRTTVAPLETIRTHLMVGSSGHSTTEVFQDIMKTDGWKGLFRGNLVNVIRVAPSKAIELFAYDTVNKNLSAKPGEQSKLPVPASLIAGACAGVSSTICTYPLELLKTRLTIQRGVYNGLVDAFVKIIKEEGPAELYRGLTPSLIGVIPYSATNYFAYDTLRKAYRKFFKQEKIGNIETLLIGSAAGAISSTATFPLEVARKHMQVGALSGRQVYKNVVHALVSILEQEGILGLYRGLGPSCMKLVPAAGISFMCYEACKKILIDNDEEE 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05210 401 Gene3D Mitochondrial carrier domain 114 399 IPR023395 -
Trre5g05210 401 PRINTS Mitochondrial carrier protein signature 268 286 IPR002067 GO:0055085
Trre5g05210 401 PRINTS Mitochondrial carrier protein signature 122 135 IPR002067 GO:0055085
Trre5g05210 401 PRINTS Mitochondrial carrier protein signature 226 244 IPR002067 GO:0055085
Trre5g05210 401 PRINTS Mitochondrial carrier protein signature 314 336 IPR002067 GO:0055085
Trre5g05210 401 PRINTS Mitochondrial carrier protein signature 175 195 IPR002067 GO:0055085
Trre5g05210 401 PRINTS Mitochondrial carrier protein signature 135 149 IPR002067 GO:0055085
Trre5g05210 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 117 200 IPR018108 -
Trre5g05210 401 SUPERFAMILY Mitochondrial carrier 118 389 IPR023395 -
Trre5g05210 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 211 295 IPR018108 -
Trre5g05210 401 ProSiteProfiles Solute carrier (Solcar) repeat profile. 305 393 IPR018108 -
Trre5g05210 401 PANTHER SOLUTE CARRIER FAMILY 25 112 394 - -
Trre5g05210 401 Pfam Mitochondrial carrier protein 119 202 IPR018108 -
Trre5g05210 401 Pfam Mitochondrial carrier protein 210 298 IPR018108 -
Trre5g05210 401 Pfam Mitochondrial carrier protein 305 397 IPR018108 -
Trre5g05210 401 FunFam Adenine nucleotide transporter BT1, chloroplastic/mitochondrial 115 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05210 Trre-Chr5 53228456 53232191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05210 1 400 Organic Solute Cotransporters AT4G32400 67.332 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05210 K14684 - qsu:111999876 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05210 5 53228456 53232191 Trre5g05210 5 53228456 53232191 ECH
Trre1g00710 1 5345119 5347923 Trre5g05210 5 53228456 53232191 PCT