Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00710 ATGGGTTGGAAAGAAATCAACAAAAACAATCTCTTTGATGATAAAAGAGATGCTTTTTTCTCAATCTCCAATTTAGGGTCTCAATGGAGTCATCACCATCATGAAGAACAAGAAGTGTTCCCTATTGGTGGTTTATTTGCAAGCATGAGTCAAAATTCAATGGGAATGGGTTTTGGTAGTGGAATTCCACAACCAAATTCATCTGATTCATCTTCTAAAAGAAACAATGGGATGAAGATTCCTTGTACTGAGTTGTACATTAGGTATGTGCAATCAGAAGGGAAAGTTAAGATTCATGGTGTTCCTGATGAGGATGAGGAAGATGAAATAGTGGAAGGTGTTAAGAGAAAGAAAAAGGGTAGTCTTAAAAAGTTTAAGATTAAGGTAAAAAACCCTTCTTTAAGGAGATTGATTAGTGGTGCTTTTGCTGGTGCTATTTCACGTACTGCTGTTGCACCTTTGGAAACTATTAGGACTCATTTGATGGTTGGAAGTAGTGGTCATTCTACTGGTGAGGTGTTTAAGAATATCATGGAGTCTGATGGATGGAAAGGCTTGTTTAGGGGTAATTTTGTTAATGTCATAAGGGTTGCACCTAGCAAGGCTATTGAGCTATTTGCTTATGATACAGTTAACAAGAACCTGTCATCAAAGCCTGGTGAAAAGCCTAAACTCCCAGTTCCTGCGTCATTGATCGCAGGTGCTTGTGCTGGAGTTAGTTCAACTATTTGCACATATCCTCTAGAATTACTCAAGACTAGATTAACCATCCAGAGAGATGTTTATAACGGTCTACTTGATGCGTTTGTGAAAATCATTCGAGAAGAAGGTGCTTCAGAACTTTACAGAGGCCTTGCTCCAAGTCTCATTGGAGTTATTCCATATTCTGCCACCAATTACTTTGCCTATGACACTTTAAGGAAAGTGTACAAGAAAGTTTTTAAGCAAGAAAAGATTGGAAACATCGAAACCCTTTTGATAGGATCTGCGGCCGGTGCTATCTCAAGTACTGCTACTTTCCCGCTTGAAGTGGCTCGCAAGCAAATGCAAGTGGGAGCACTTAGTGGAAGACAAGTTTACAAAAATGTGATTCATGCACTTGCATGCATACTTGAGAAGGAAGGTATCCAAGGTTTGTATAGAGGATTAGGACCAAGCTGCATGAAGTTGGTTCCAGCTGCAGGAATCTCTTTCATGTGCTATGAAGCATGCAAGAGGATATTGGTAGAGGAAGACGATGATGATGACAATGAGGAATAG 1260 0.396 MGWKEINKNNLFDDKRDAFFSISNLGSQWSHHHHEEQEVFPIGGLFASMSQNSMGMGFGSGIPQPNSSDSSSKRNNGMKIPCTELYIRYVQSEGKVKIHGVPDEDEEDEIVEGVKRKKKGSLKKFKIKVKNPSLRRLISGAFAGAISRTAVAPLETIRTHLMVGSSGHSTGEVFKNIMESDGWKGLFRGNFVNVIRVAPSKAIELFAYDTVNKNLSSKPGEKPKLPVPASLIAGACAGVSSTICTYPLELLKTRLTIQRDVYNGLLDAFVKIIREEGASELYRGLAPSLIGVIPYSATNYFAYDTLRKVYKKVFKQEKIGNIETLLIGSAAGAISSTATFPLEVARKQMQVGALSGRQVYKNVIHALACILEKEGIQGLYRGLGPSCMKLVPAAGISFMCYEACKRILVEEDDDDDNEE 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00710 419 PRINTS Mitochondrial carrier protein signature 240 258 IPR002067 GO:0055085
Trre1g00710 419 PRINTS Mitochondrial carrier protein signature 328 350 IPR002067 GO:0055085
Trre1g00710 419 PRINTS Mitochondrial carrier protein signature 149 163 IPR002067 GO:0055085
Trre1g00710 419 PRINTS Mitochondrial carrier protein signature 136 149 IPR002067 GO:0055085
Trre1g00710 419 PRINTS Mitochondrial carrier protein signature 282 300 IPR002067 GO:0055085
Trre1g00710 419 PRINTS Mitochondrial carrier protein signature 189 209 IPR002067 GO:0055085
Trre1g00710 419 SUPERFAMILY Mitochondrial carrier 132 403 IPR023395 -
Trre1g00710 419 Gene3D Mitochondrial carrier domain 127 413 IPR023395 -
Trre1g00710 419 PANTHER SOLUTE CARRIER FAMILY 25 117 408 - -
Trre1g00710 419 ProSiteProfiles Solute carrier (Solcar) repeat profile. 131 214 IPR018108 -
Trre1g00710 419 Pfam Mitochondrial carrier protein 225 312 IPR018108 -
Trre1g00710 419 Pfam Mitochondrial carrier protein 132 216 IPR018108 -
Trre1g00710 419 Pfam Mitochondrial carrier protein 319 410 IPR018108 -
Trre1g00710 419 ProSiteProfiles Solute carrier (Solcar) repeat profile. 319 407 IPR018108 -
Trre1g00710 419 MobiDBLite consensus disorder prediction 58 77 - -
Trre1g00710 419 ProSiteProfiles Solute carrier (Solcar) repeat profile. 225 309 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00710 Trre-Chr1 5345119 5347923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00710 11 414 Organic Solute Cotransporters AT4G32400 62.899 3.04e-175 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00710 K14684 - gmx:100816041 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00710 1 5345119 5347923 Trre1g00710 1 5345119 5347923 ECH
Trre1g00710 1 5345119 5347923 Trre5g05210 5 53228456 53232191 PCT