Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05197 ATGTCTAAAGTTTTCAGCTTTACTGGAAGTGATGATTTTTTTACTGGGAGGTCATTATACCCTAATCCGAAGGAGGCGGGTCTCTTCTTGTCTCTTGGCCGTCAAGAGTATGCTTACAAACCTCTTCCGAAGAGATCTCGTGTTAGCGTTTCATTTGATTTCGGTGGAGAAAACTTGTTTGATCAGAAGCCAGAGACATCTATCGAAACATTGCCTGATGAATGCCTCTTTGAGATCCTTAGAAGGTTGCCTGAAGGCCAGGACAGGAGTTTATGTGCTTCTGTATCAAAACGTTGGCTTATGCTTCTGAGCAGTATTTGCAAGAATGAAATCTGCAGCAACGTAAGTACCAAAAATGGAAATGAGGATAGTGAGGAAGGGTGCCTTTCTCGAAGCTTGGATGGAAAGAAGGCAACAGATATTAGACTAGCTGCCATTGCTGTTGGTACAGCATCTCGTGGAGGATTAGGGAAGCTTTCGATTCATAGATCCAATACAGATCGTCCGTTGACTGATGTAGGTCTCAAGGCAGTTGCTCATGGTTGCCCTTCTCTAAAGTTTCTCAATCTTTGGGATGTTGCTACCATTAGTGACGAAGGCCTCGTTGAGATTGCTAATGGTTGTCACCAGTTAGAGAAGCTTGATCTTTGCAAGTTGCCCACAATTTCTGACAAGGCTTTAATTGCAGTTGCAAAGAACTGCCCGAAGCTGAACGAGTTATCGATAGAGTCATGTCCTAAAATCAGTAATGAAGGTCTGAAAGCTATTGGGAAGTTGTGTCCCAATCTAAGGTCCGTTTCAATTAAAAACTGTCCTGGAGTTGGTGATCAGGGAATAGCTGGCTTGGTATCTGGAGCATCCTTTGTTCTAACAAATGTGACACTTGAATCGCTTGCTGTTTCTGATTACTCGCTAGCAGTTATTGGACAATATGGATTTGTGGTTACTGATCTTGTCCTAAATTCCCTTGCAAATGTCACCGAGAAGGGATTCTGGGTGATGGGTAATGGCCGTGCACTGCAGAAACTGACGTCGCTCACAATTGGGTCGTGCCCAGGAGTAACAGATGTTGGGCTTGAAGCTATAGGAAAGGGTTGTCCAAATGTGAAAAACTTTGAGCTTCATAGGTGTGCATTTCTGTCGGACAATGGGTTGGTATCATTCACCAAGGCTGCTCCATCAATTGAGAGCCTACAATTGGAAGAGTGCCACAGGGTTACCCAACTCGGGCTTGTCGGTGTCCTTTTTAACTGCGGTGCAAAATTGAAGGCTCTTACTCTAGTACGCTGCTACGGGATCAAAGATATGAATCTTGTATTGCCAGCAGTATCTCCTTGTGAATCAGTTTCGTCCTTATCAATCCGTAACTGTCCTGGAGTTGGTAATTCTACTCTTGCTGTCGTTGGGAAGCTTTGTCCTCTTCTTCAGAAACTTGAATTGGTCGGACTTGAAGGAGTAACAGACACAGGGTTTCTCTCTCTGCTTGAGGGGTCTAAGGCTAGTTTGGCTAATGTTAATCTACGTGGTTGCATTAATCTGACAGATGCAGGAGTTTTGTCCATGGTAAAGTTGCATGGTTCGACTCTTGATGTGCTAAACCTCAACTGTTGTAAAAAAATCAGCGATGCTAGCTTGACAGCAATTGCAGGAAACTGCCCATTGCTCAGTGATCTTGATGTTTCCAGGTGTGCAATCACCGATGCAGGGATTACTGCCATTGCTTGTGGAGTCCAGCTCAATCTTGAGGTGCTTTGTTTGGCAGGTTGCAATTCGGTTACAAACAAGAGCATGCAAGCTTTGAAAAAAATGGGCGATTCCCTCCAGGGATTAAATATAAAAAATTGCAAGTCAATCAGCAGCCGCGCAGTTGACAAGCTTGTTGAACATCTCTGGATGTGTGACATCCTCTTCTGA 1914 0.4415 MSKVFSFTGSDDFFTGRSLYPNPKEAGLFLSLGRQEYAYKPLPKRSRVSVSFDFGGENLFDQKPETSIETLPDECLFEILRRLPEGQDRSLCASVSKRWLMLLSSICKNEICSNVSTKNGNEDSEEGCLSRSLDGKKATDIRLAAIAVGTASRGGLGKLSIHRSNTDRPLTDVGLKAVAHGCPSLKFLNLWDVATISDEGLVEIANGCHQLEKLDLCKLPTISDKALIAVAKNCPKLNELSIESCPKISNEGLKAIGKLCPNLRSVSIKNCPGVGDQGIAGLVSGASFVLTNVTLESLAVSDYSLAVIGQYGFVVTDLVLNSLANVTEKGFWVMGNGRALQKLTSLTIGSCPGVTDVGLEAIGKGCPNVKNFELHRCAFLSDNGLVSFTKAAPSIESLQLEECHRVTQLGLVGVLFNCGAKLKALTLVRCYGIKDMNLVLPAVSPCESVSSLSIRNCPGVGNSTLAVVGKLCPLLQKLELVGLEGVTDTGFLSLLEGSKASLANVNLRGCINLTDAGVLSMVKLHGSTLDVLNLNCCKKISDASLTAIAGNCPLLSDLDVSRCAITDAGITAIACGVQLNLEVLCLAGCNSVTNKSMQALKKMGDSLQGLNIKNCKSISSRAVDKLVEHLWMCDILF 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05197 637 CDD F-box_AtTIR1-like 71 105 - -
Trre5g05197 637 FunFam EIN3-binding F-box protein 1 247 437 - -
Trre5g05197 637 FunFam EIN3-binding F-box protein 1 498 635 - -
Trre5g05197 637 Gene3D - 61 110 - -
Trre5g05197 637 Pfam Leucine Rich repeat 341 362 IPR001611 GO:0005515
Trre5g05197 637 Pfam Leucine Rich repeat 528 549 IPR001611 GO:0005515
Trre5g05197 637 Pfam Leucine Rich repeat 552 574 IPR001611 GO:0005515
Trre5g05197 637 Pfam Leucine Rich repeat 233 256 IPR001611 GO:0005515
Trre5g05197 637 Gene3D Ribonuclease Inhibitor 439 574 IPR032675 -
Trre5g05197 637 Gene3D Ribonuclease Inhibitor 575 633 IPR032675 -
Trre5g05197 637 PANTHER UNCHARACTERIZED 297 465 - -
Trre5g05197 637 FunFam EIN3-binding F-box protein 1 128 246 - -
Trre5g05197 637 SUPERFAMILY RNI-like 175 282 - -
Trre5g05197 637 SMART LRR_CC_2 578 603 IPR006553 -
Trre5g05197 637 SMART LRR_CC_2 604 629 IPR006553 -
Trre5g05197 637 SMART LRR_CC_2 392 417 IPR006553 -
Trre5g05197 637 SMART LRR_CC_2 552 576 IPR006553 -
Trre5g05197 637 SMART LRR_CC_2 208 233 IPR006553 -
Trre5g05197 637 SMART LRR_CC_2 182 207 IPR006553 -
Trre5g05197 637 SMART LRR_CC_2 340 365 IPR006553 -
Trre5g05197 637 SMART LRR_CC_2 499 524 IPR006553 -
Trre5g05197 637 SMART LRR_CC_2 234 259 IPR006553 -
Trre5g05197 637 SMART LRR_CC_2 472 497 IPR006553 -
Trre5g05197 637 SMART LRR_CC_2 366 391 IPR006553 -
Trre5g05197 637 SMART LRR_CC_2 526 551 IPR006553 -
Trre5g05197 637 SMART LRR_CC_2 260 285 IPR006553 -
Trre5g05197 637 SMART LRR_CC_2 446 471 IPR006553 -
Trre5g05197 637 Gene3D Ribonuclease Inhibitor 249 438 IPR032675 -
Trre5g05197 637 SMART fbox_2 71 112 IPR001810 GO:0005515
Trre5g05197 637 FunFam EIN3-binding F-box protein 1 61 110 - -
Trre5g05197 637 Pfam F-box domain 71 107 IPR001810 GO:0005515
Trre5g05197 637 SUPERFAMILY F-box domain 60 108 IPR036047 GO:0005515
Trre5g05197 637 SUPERFAMILY RNI-like 338 633 - -
Trre5g05197 637 Gene3D Ribonuclease Inhibitor 133 248 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05197 Trre-Chr5 53128645 53131251 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05197 K14515 - gmx:100805418 925.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05197 5 53128645 53131251 Trre5g05197 5 53128645 53131251 ECH
Trre1g00698 1 5279063 5282280 Trre5g05197 5 53128645 53131251 PCT