Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00698 ATGTCTCAAGTCTTCGGCTTTTCTGGTGATAGCTTTTGCCACGGGGGTTCGATTTACACAAACCCCAAGGAAGCTAGTTTCTTCCTGTCTCTTGGCCACCAAGCTGATGTCTACTATCCTCCTCAGAAGAGATCACGTGTCAGTGTTCCATTTGTTTTCGATGGAGAATGGTTCAAGCAGAAGCAGAAAACCTCTATTGAATCTTTGCCAGATGAGTGCCTCTTTGAGATCTTTAGAAGGTTGCCTGTTGGTGAAGAAAGGAGTGCATGTGCTTGCGTTTCCAAACGCTGGCTTATGCTTCTAAGCAATATTTGCAAGAGTGAAATCTGTAGCAACAAAAGTACCAACTCAGATGACGAGAATAAAATGGAAAGTGACAGTGAAGAGTTCGGAGTTGGAACCGCATCACGAGGAGGATTGGGGAAGCTTTCAATCCGTGGAAGCAACTCGGTTCGTGGGGTGACTGCTCTAGGTCTTAAAGCAGTTGCTAGCGGATGCCCTTCTCTAAAGGCTCTTTCTCTATGGAATGTTTCTTCTGTTGGTGATGAAGGCATAATTGAGATTGCCAATGGATGTCAACAGCTAGAGAAGCTTGACCTCTGCAAATGCCCTGCAATCTCTGACAAGGCTTTAATCGCAGTTGCAAAGAAGTGTCCTAATCTGACCGAGTTATCATTAGAGTCTTGTCCTAGTATTTGCAATGAAGGTCTACAAGCCATTGGAAAGTTCTGCCCCAATCTAAAGTCTGTATCTATCAAGGACTGTGCCGGTGTTGGTGATCAGGGAATTGCTGGCCTATTTTCTTCAACTTCTTTGGTGCTGACAAAGGTGAAGCTCCAGGCACTAACTGTTACAGATCTATCTCTAGCTGTTATTGGACATTATGGAAAATCAGTTACCGATCTTGTCCTTAATTTCCTCCCAAATGTTAGTGAAAGAGGTTTCTGGGTTATGGCTAATGCTAATGGATTACATAAATTGAAGTCGCTCACAATTGCGTCCTGCCGAGGAGTAACTGATGTTGGACTTGAAGCTGTTGGAAAGGGCTGCCCTAATCTGAAAAGCGTACACCTTCACAAGTGTGCGTTTCTCTCAGACAACGGATTGATTGCATTCACCAAAGCAGCTATTTCACTTGAAAGCCTACAATTGGAAGAGTGCCACAGAATTACCCAATTTGGGTTTTTCGGTGTCCTTTTTAACTGTGGTGCAAAATTGAAGGCTCTTTCACTTGTAAGCTGCTATGGGATCAAAGACTTGGACTTGGAATTGTCTCCAGTAGCTCCTTGTAAATCACTCCGTTCGCTATCCATCTGTAACTGCCCTGGATTTGGCAATGCTACCCTTTCTGTACTCGGAAAGTTGTGCCCTCAGCTTCAACAGGTTGAATTGACTGGACTTAAGGGAGTGACAGATGCTGGTTTGCTTCCACTGCTTGAGAGCTCCGAGGCTGGTCTCGTTAAAGTTAATCTTAATGGTTGTATCAATCTTACCGACAAAGTAGTTTCATCCCTGGTCAATCTGCATGGTTGGACTCTTGAGGTTCTAAACCTCGAAGGTTGTAAAAATATCAGCAACGCTAGCTTGGTAGCAATTGCTGAACATTGCCAATTGCTTTGTGATCTTGATGTTTCCATGTGTGCAATCTCTGATGCTGGGATGGCAGCCCTGACACATGCAAAACAGTTAAATCTACAGATTCTTTCTCTGTCAGGCTGCACTTTGGTTACAGACAGGAGTTTGCCCGCTTTGAGGAAATTGGGCCACACCCTTTTGGGACTAAATATCCAGCACTGCAATTCAATCAGCAGCAGCGCGGTTGAAATGCTTGTTGAACATCTTTGGAGTTATCTGTACCACGGTGTCCATAGGTGTTTTGACTCAAAGGACAGTTTCAGTATTTGTGCTCTTGTTAGGGTTGTTGCAGTTGTCGGGTTCAGAGTTATGATGCCTTGTTTTCGGGGACCTTGGCCATGGCGGCAAGTTATACATGTCTGCCATGACAATCTTCTTCCTTTGGGAAAAGGTTGTTTTTTTTACCAGGCCCTAGTTTTTTTAAGGCTTCATTTTTTATGA 2076 0.4408 MSQVFGFSGDSFCHGGSIYTNPKEASFFLSLGHQADVYYPPQKRSRVSVPFVFDGEWFKQKQKTSIESLPDECLFEIFRRLPVGEERSACACVSKRWLMLLSNICKSEICSNKSTNSDDENKMESDSEEFGVGTASRGGLGKLSIRGSNSVRGVTALGLKAVASGCPSLKALSLWNVSSVGDEGIIEIANGCQQLEKLDLCKCPAISDKALIAVAKKCPNLTELSLESCPSICNEGLQAIGKFCPNLKSVSIKDCAGVGDQGIAGLFSSTSLVLTKVKLQALTVTDLSLAVIGHYGKSVTDLVLNFLPNVSERGFWVMANANGLHKLKSLTIASCRGVTDVGLEAVGKGCPNLKSVHLHKCAFLSDNGLIAFTKAAISLESLQLEECHRITQFGFFGVLFNCGAKLKALSLVSCYGIKDLDLELSPVAPCKSLRSLSICNCPGFGNATLSVLGKLCPQLQQVELTGLKGVTDAGLLPLLESSEAGLVKVNLNGCINLTDKVVSSLVNLHGWTLEVLNLEGCKNISNASLVAIAEHCQLLCDLDVSMCAISDAGMAALTHAKQLNLQILSLSGCTLVTDRSLPALRKLGHTLLGLNIQHCNSISSSAVEMLVEHLWSYLYHGVHRCFDSKDSFSICALVRVVAVVGFRVMMPCFRGPWPWRQVIHVCHDNLLPLGKGCFFYQALVFLRLHFL 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00698 691 MobiDBLite consensus disorder prediction 114 133 - -
Trre1g00698 691 FunFam EIN3-binding F-box protein 1 127 340 - -
Trre1g00698 691 Pfam F-box domain 67 104 IPR001810 GO:0005515
Trre1g00698 691 FunFam EIN3-binding F-box protein 1 59 108 - -
Trre1g00698 691 Gene3D Ribonuclease Inhibitor 59 270 IPR032675 -
Trre1g00698 691 Gene3D Ribonuclease Inhibitor 271 422 IPR032675 -
Trre1g00698 691 SUPERFAMILY RNI-like 282 618 - -
Trre1g00698 691 SMART fbox_2 69 110 IPR001810 GO:0005515
Trre1g00698 691 SUPERFAMILY RNI-like 144 311 - -
Trre1g00698 691 Gene3D Ribonuclease Inhibitor 483 543 IPR032675 -
Trre1g00698 691 Gene3D Ribonuclease Inhibitor 423 482 IPR032675 -
Trre1g00698 691 Gene3D Ribonuclease Inhibitor 544 635 IPR032675 -
Trre1g00698 691 SMART LRR_CC_2 218 243 IPR006553 -
Trre1g00698 691 SMART LRR_CC_2 536 560 IPR006553 -
Trre1g00698 691 SMART LRR_CC_2 483 508 IPR006553 -
Trre1g00698 691 SMART LRR_CC_2 350 375 IPR006553 -
Trre1g00698 691 SMART LRR_CC_2 192 217 IPR006553 -
Trre1g00698 691 SMART LRR_CC_2 324 349 IPR006553 -
Trre1g00698 691 SMART LRR_CC_2 510 535 IPR006553 -
Trre1g00698 691 SMART LRR_CC_2 376 401 IPR006553 -
Trre1g00698 691 SMART LRR_CC_2 456 481 IPR006553 -
Trre1g00698 691 SMART LRR_CC_2 166 191 IPR006553 -
Trre1g00698 691 SMART LRR_CC_2 244 269 IPR006553 -
Trre1g00698 691 SMART LRR_CC_2 430 455 IPR006553 -
Trre1g00698 691 SMART LRR_CC_2 562 587 IPR006553 -
Trre1g00698 691 SUPERFAMILY F-box domain 62 103 IPR036047 GO:0005515
Trre1g00698 691 FunFam EIN3-binding F-box protein 1 482 617 - -
Trre1g00698 691 CDD F-box_AtTIR1-like 66 100 - -
Trre1g00698 691 Pfam Leucine Rich repeat 244 266 IPR001611 GO:0005515
Trre1g00698 691 Pfam Leucine Rich repeat 217 240 IPR001611 GO:0005515
Trre1g00698 691 Pfam Leucine Rich repeat 325 346 IPR001611 GO:0005515
Trre1g00698 691 Pfam Leucine Rich repeat 536 557 IPR001611 GO:0005515
Trre1g00698 691 PANTHER UNCHARACTERIZED 512 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00698 Trre-Chr1 5279063 5282280 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00698 K14515 - gmx:100820247 1005.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00698 1 5279063 5282280 Trre1g00698 1 5279063 5282280 ECH
Trre1g00698 1 5279063 5282280 Trre5g05197 5 53128645 53131251 PCT