Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05196 ATGAAAGAAGGATCGAACGGTAAAATAGACGGAGACAATGTTAATGTTTCTAAGGAAGAGGGAGTTGAAATCGTAGATGAAACGGATAAATCTAGAATGCGAAAGGGTCCTGTGAAGAATAAGAATTCGAAACTGCCAAGTCCTAGAGGTGTTCATACAAATTCGGTAAGAAATAGCAAAGACGGGAAAGATAAAGAGGCGACAGCAGCAACAACATCGGTTTCAAATGGTACTTCGACTAAGAACAAAGCAGTCATTGACAAGCAGACTCGATTGTCCAAGCACCCTGGAAAGTCTGATGCAGCATCTTCTGAAGCACCAATGGAGAAGACTAGACCACGATTAGTAAAGAAAGAACCCCTTGATAATATTCCAGGAAAAACTGAATCATCTTCTCCCACATCAGAAGATGCCAAACCTCGTAGAGTGGGGACAATGCCAACTTATGGATTCAGTTTCAAATGTAATGAGCGAGCTGAGAGAAGAAAAGAGTTTTACTCTAAGCTCGAGGAAAGGATTCATGCGAAGGAAGTTGAGGAGAGCAACCTGCAAGCAAAAACCAAGGAGAGCCAAGAAGCTGAGATTAAGAGGCTTAGGAAAAAACTAGCATTTAAAGCAACTCCAATGCCAAGCTTCTACCAGGAGCCTCCTCCTTCTAGGGTGGAGTTGAAGAAGATGCCAACGACAAGAGCAAAATCTCCCAAGCTTGGTCGTAAGAAGAGTTCAACATCTTCAGAGCCAGAAGGACACACCAACAGCAGTATTCTACAATGCCGTTTAAGTCTGGATGAGAAAGTGTCTCAAAATAACACCATTAAAGGAATTAGTCCTGTTCATACAAAGAAGCCGCAACGAAGATCTCTCCCTCCTCGACTGACTCCTGAAAAGATCAGTTCGTCCAATCCAGCAACTGCACGGACTTCGTCTAAGGCGGTGAGTGATGAAAAAACCTCCTTATCTAGTGTAACAACTGAAGTTACCACCTTGTCTATTGCAACAAGGGAAGAGAAAGTTGAAGCTGCAGCTATTGAGGAGAACAATGCCTTTTCTGATGAGACAAGTGAAACTCCGTCTCTGAACATAGATCCAGGTGAAGTAGAATCCCATGTGAATGGTGATATATTCATTGAAGACAAACCACAGCGCACCTTGGTACAAGAACCTATAGCAGCAGAGTATTAA 1182 0.4281 MKEGSNGKIDGDNVNVSKEEGVEIVDETDKSRMRKGPVKNKNSKLPSPRGVHTNSVRNSKDGKDKEATAATTSVSNGTSTKNKAVIDKQTRLSKHPGKSDAASSEAPMEKTRPRLVKKEPLDNIPGKTESSSPTSEDAKPRRVGTMPTYGFSFKCNERAERRKEFYSKLEERIHAKEVEESNLQAKTKESQEAEIKRLRKKLAFKATPMPSFYQEPPPSRVELKKMPTTRAKSPKLGRKKSSTSSEPEGHTNSSILQCRLSLDEKVSQNNTIKGISPVHTKKPQRRSLPPRLTPEKISSSNPATARTSSKAVSDEKTSLSSVTTEVTTLSIATREEKVEAAAIEENNAFSDETSETPSLNIDPGEVESHVNGDIFIEDKPQRTLVQEPIAAEY 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05196 393 MobiDBLite consensus disorder prediction 1 149 - -
Trre5g05196 393 PANTHER PROTEIN WVD2-LIKE 4 27 363 IPR044833 GO:0008017
Trre5g05196 393 MobiDBLite consensus disorder prediction 246 277 - -
Trre5g05196 393 MobiDBLite consensus disorder prediction 293 322 - -
Trre5g05196 393 Coils Coil 166 196 - -
Trre5g05196 393 MobiDBLite consensus disorder prediction 347 361 - -
Trre5g05196 393 MobiDBLite consensus disorder prediction 1 36 - -
Trre5g05196 393 MobiDBLite consensus disorder prediction 68 86 - -
Trre5g05196 393 MobiDBLite consensus disorder prediction 105 124 - -
Trre5g05196 393 MobiDBLite consensus disorder prediction 201 322 - -
Trre5g05196 393 MobiDBLite consensus disorder prediction 343 367 - -
Trre5g05196 393 Pfam Targeting protein for Xklp2 (TPX2) domain 151 221 IPR027329 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05196 Trre-Chr5 53114420 53117842 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05196 - - gmx:100804879 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05196 5 53114420 53117842 Trre5g05196 5 53114420 53117842 ECH
Trre1g00697 1 5266921 5270792 Trre5g05196 5 53114420 53117842 PCT