Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05176 ATGGCCACAATGATCATGGCTTCTTCAAAACCCATAATCCGAGTCCCCACAAATTCCCTTCCATCTACCCCAAAACTTCCCCAACTCCAAATTTCACTCCCAACCATCACCCCCAAACTCAAACTCCAACTCTCAAAACTCAAAAACCTAACCCTAGCAACAACTTCACTCTCCTTAGCCTTCGCACCACCTTCCTTCGCATTCGAAAAAGCCGCACTCTTCGATTTCAATCTCACTCTCCCAATCATAGTCGTCGAGTTTCTTTTCCTCATGGTTGCTCTCGACAAACTTTACTTCACACCTCTCGGAAATTTCATGGACGAAAGGGACGCTAACATCAGAGGAAAATTGAACAGCGTGAAAGACACCTCGGGGGAGGTGAAACAGTTGGAGGAACAAGCGAATGCTGTTTTGAGAGCAGCGCGTGCGGAAATAGCTGTGGCTTTGAATCAGATGAAGAAGGAAACTCAAGCTGAAGTTGAAGCTAAGATTGCTGAAGGTAGGCAGAAAGTGGATGCTGAATTGCAAGAAGCTCTTGCGAATTTGGAAAAGCAAAAGGAAGAAACTGTTAAGGCTCTTGATTCTCAGATTGCTGCTCTTAGCCAGGATATTGTTAATAAGGTTCTTCCTACTGCTTAA 639 0.4476 MATMIMASSKPIIRVPTNSLPSTPKLPQLQISLPTITPKLKLQLSKLKNLTLATTSLSLAFAPPSFAFEKAALFDFNLTLPIIVVEFLFLMVALDKLYFTPLGNFMDERDANIRGKLNSVKDTSGEVKQLEEQANAVLRAARAEIAVALNQMKKETQAEVEAKIAEGRQKVDAELQEALANLEKQKEETVKALDSQIAALSQDIVNKVLPTA 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05176 212 Coils Coil 168 203 - -
Trre5g05176 212 Hamap ATP synthase subunit b' [atpF2]. 73 210 IPR034679 GO:0015078|GO:0015986|GO:0045263
Trre5g05176 212 Coils Coil 120 158 - -
Trre5g05176 212 CDD ATP-synt_Fo_b 79 209 - -
Trre5g05176 212 Pfam ATP synthase B/B' CF(0) 80 209 IPR002146 GO:0015078|GO:0015986|GO:0045263
Trre5g05176 212 PANTHER ATP SYNTHASE SUBUNIT B', CHLOROPLASTIC 68 211 - -
Trre5g05176 212 Hamap ATP synthase subunit b [atpF]. 74 211 IPR002146 GO:0015078|GO:0015986|GO:0045263
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05176 Trre-Chr5 52984168 52984806 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05176 K02109 - cpap:110806430 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05176 5 52984168 52984806 Trre5g05176 5 52984168 52984806 ECH
Trre5g05176 5 52984168 52984806 Trre1g00693 1 5239173 5242467 ECH
Trre1g00693 1 5239173 5242467 Trre5g05176 5 52984168 52984806 PCT