Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00693 ATGGCGGAAACTAGTTTATCGTTGATAGTTCCCAACACAAAGAAGAAAACGCCTCAAATTTCTTCTTCTTCTTCTTCGATTGAGCTTTTTTGTAGGAACAATTTGTTTTATGATAAGCTTCCTTCACAACCGTTAAGGCTTTCTGTTCTCAAATTAGACGGTTCTTCTTTCGATATTCAAGTTTCCAAGACTGCAACTATTGCAGAGCTTAAGGATGCAGTGGAAGCTGTTTTTAGTTACATGCCTCAGCATGGTCCGGCCAAAATTTCATGGCCACATGTTTGGGGACAGTTTTGCTTATCCTATGACGGAAGGAAGCTAGTCACCGAAGAGGATCATCTTAGAAATTATGGCGTCAAGGATGGTGACCAGCTCAATTTCATTCGCCATGTATCAAACAATTGTGGTGTTCAAAGAAAGCGGTCGAAGAAAAGAGTTTTCCATATGAAACAAAACCGGAGGTCGTCGCAAGTGAGTTACTGCAAACAGAATGAAAATTGCGATGATGATGATGACAGCATTGGTTCTGATGAGGAAGCCTTGGAGAATGCAGAGACCAAACACAGCATTGAGGAAGGGCATGTTAGAAAGAACAAGTTTACTGGCTTTGTGGGAGAGTTATTGTCCACACCGCTAGCAGTTGTGAGAAAAACTAATACTCAAAACCAGATTTTCCCGTCTACAATTTCAAAGTGCATGATTGGTGGATTTAGAAAGATTAAAAGGATTGTATGTTTTGGCAGGAGGCAACAGTATCCTACATGGAGACAGTATCAATAA 780 0.4051 MAETSLSLIVPNTKKKTPQISSSSSSIELFCRNNLFYDKLPSQPLRLSVLKLDGSSFDIQVSKTATIAELKDAVEAVFSYMPQHGPAKISWPHVWGQFCLSYDGRKLVTEEDHLRNYGVKDGDQLNFIRHVSNNCGVQRKRSKKRVFHMKQNRRSSQVSYCKQNENCDDDDDSIGSDEEALENAETKHSIEEGHVRKNKFTGFVGELLSTPLAVVRKTNTQNQIFPSTISKCMIGGFRKIKRIVCFGRRQQYPTWRQYQ 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00693 259 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 28 244 IPR039690 GO:0000398|GO:0005689
Trre1g00693 259 Gene3D - 40 139 - -
Trre1g00693 259 CDD Ubl_SNRNP25 45 130 IPR040610 -
Trre1g00693 259 Pfam Ubiquitin-like domain 45 131 IPR040610 -
Trre1g00693 259 SUPERFAMILY Ubiquitin-like 40 136 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00693 Trre-Chr1 5239173 5242467 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00693 - - gmx:100820296 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00693 1 5239173 5242467 Trre1g00693 1 5239173 5242467 ECH
Trre5g05176 5 52984168 52984806 Trre1g00693 1 5239173 5242467 ECH
Trre1g00693 1 5239173 5242467 Trre5g05176 5 52984168 52984806 PCT