Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05173 ATGGCTTCCAACAACAAATTCTCTGCCATCATTTTAGTGCTTTCTCTTCTTACTTACTCAACATTCACTCATGCTAATGGTTCATGCCCACCATCACCAAAGCCAACACCTTCACCTAGTACTTCTCCACCATCCCAAGGTCAATGCCCCAAGGATACCTTAAAGCTAGGGGTTTGTGCTGATCTTTTAGGGTTGGTTAATGTTATTATTGGAAATCCTCCTTCCGGTAGTAAGTGTTGTGCATTGATCCAAGGTTTGGCTGATTTGGAGGCCGCGGTATGTCTTTGCACCGCAATTAAGGCCAATGTGCTTGGAATAAACTTGAACGTACCTCTTGCACTCTCTTGGGTTCTTAGTGCGTGTCAAAAGAATGTCCCTTCTGGTTACCAATGCGCCTAA 399 0.4436 MASNNKFSAIILVLSLLTYSTFTHANGSCPPSPKPTPSPSTSPPSQGQCPKDTLKLGVCADLLGLVNVIIGNPPSGSKCCALIQGLADLEAAVCLCTAIKANVLGINLNVPLALSWVLSACQKNVPSGYQCA 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05173 132 CDD HPS_like 47 131 IPR027923 -
Trre5g05173 132 Gene3D - 47 132 IPR036312 -
Trre5g05173 132 MobiDBLite consensus disorder prediction 28 49 - -
Trre5g05173 132 Pfam Hydrophobic seed protein 49 132 IPR027923 -
Trre5g05173 132 SMART aai_6 49 131 IPR016140 -
Trre5g05173 132 PANTHER - 7 131 - -
Trre5g05173 132 MobiDBLite consensus disorder prediction 30 44 - -
Trre5g05173 132 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 52 131 IPR036312 -
Trre5g05173 132 FunFam pEARLI1-like lipid transfer protein 1 47 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05173 Trre-Chr5 52953586 52956147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05173 47 131 Acyl Lipid Metabolism Gene Families AT4G22490 37.647 4.04e-15 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05173 - - psat:127093350 168.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05173 5 52953586 52956147 Trre5g05173 5 52953586 52956147 ECH
Trre1g00685 1 5184376 5184864 Trre5g05173 5 52953586 52956147 PCT