Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00685 ATGGCTTACAACAAGCTTAGTGCACTCATCATATTGTTTTCCCTCCTTGCTTATTCAACATTCTCTCATGCTTGTGGTACATGCAAACCACCTAAGCCTAGCCCACCTCCTCCTTCTCCTTGTCCTCCTCCACCACCATCAAAAACACCTAAGGCTAGTCCTCCACCACATTCAACAACACCAAAAGCTAGTCCTCCACCTAAGGCAGGTACTCCACCTCCTTCAACCACACAAAAATGTCCTAGTGACACATTAAAGCTAGGTGTTTGTGCTGATGTTTTAGGACTTGTTAATATTGTTGTTGGATCTCCTGCTTCAAGTAAGTGTTGTGCATTGATTCAAGGTTTGGCTGATTTGGATGCAGCAGTTTGTCTTTGTACTGCTATTAAGGCTAATGTTCTTGGTATCAACTTGAATATTCCTGTCACACTAAGTCTCTTACTTAGTGCTTGTCAAAAATCTATTCCTTCTGGTTTTCAATGTTCTTAG 489 0.4172 MAYNKLSALIILFSLLAYSTFSHACGTCKPPKPSPPPPSPCPPPPPSKTPKASPPPHSTTPKASPPPKAGTPPPSTTQKCPSDTLKLGVCADVLGLVNIVVGSPASSKCCALIQGLADLDAAVCLCTAIKANVLGINLNIPVTLSLLLSACQKSIPSGFQCS 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00685 162 CDD HPS_like 77 161 IPR027923 -
Trre1g00685 162 MobiDBLite consensus disorder prediction 29 80 - -
Trre1g00685 162 SMART aai_6 80 161 IPR016140 -
Trre1g00685 162 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 83 161 IPR036312 -
Trre1g00685 162 Gene3D - 76 162 IPR036312 -
Trre1g00685 162 MobiDBLite consensus disorder prediction 29 74 - -
Trre1g00685 162 Pfam Hydrophobic seed protein 80 162 IPR027923 -
Trre1g00685 162 PANTHER - 6 161 - -
Trre1g00685 162 FunFam pEARLI1-like lipid transfer protein 1 78 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00685 Trre-Chr1 5184376 5184864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00685 73 161 Acyl Lipid Metabolism Gene Families AT4G22490 35.955 1.15e-15 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00685 - - psat:127093350 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00685 1 5184376 5184864 Trre1g00685 1 5184376 5184864 ECH
Trre1g00685 1 5184376 5184864 Trre5g05173 5 52953586 52956147 PCT