Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05155 ATGTCATTATTTTCTACTCTCCGCCGATCCTCCTTCATCCAACGCTTCCGAACTTCGACCACACAATCTTCTTCTGCACCATCATTACCGAATACCAACCAACCTCGATATCCAAAGTTGGTTCCGGCAGTTGTTATTGGCTCCGCGCTTGCTCTTTTGTATTACTTCTCCAAAATTAATTCACACTTCGACTCCGCTTTCTTAAACAATGCCTTTAGAAAATTATCACTTCCTGAGAGTACCAACAATAACTTACTTTTTGGAGATGCCTATAGAAGTAAGGTTTTCTTCAACTATGAGAAGCGCATTAGGTTGCATAGTCCACCTGAAAAGGTTTTTGAATACTTTGCATCTTATCGAGAAGGGGAGCCTCTTATGACTCCGGCAGATTTAATGCGCGCAGTAGTTCCTGTTTTCCCTCCATCAGAATCAAATCTTGTTAGAGAAGGACACTTGAAAGGAGAAAGAAGTCCTGGCCACTTGTTTTGTCCTCCCTCGGATTTTTTTATGCTTTTCGATGTAAATGGTGATGGCCTTATATCTTTCCGAGAGTATTTATTCTTGGTAACACTGCTTAGCATTCCAGAATCAAGTTTTTCTGCAGTGTTTAAAATGTTTGACATGGATAATGATGGGGAGATAGATAAAGAAGAATTCAAAAGAGTGGTGACATCAATGCGATCTCATAGCAGGCACGGTGTTCACCGAAGGGATGAACTACTGACGGATGCTTCAATAGAAAATGGAAGGATGGTGGAATACTTATTTGGTAAAGATGGAAAAGGACGGCTCAAACATGATAAATTTGTGAAGTTTATAAGCGATTTGCATGATGAAATTTTGCGGCTGGAGTTTGTTCATTATGACTTCAAATCTCGAAAAACTATATCAGCCAAGGATTTTGCACACTCAATAGTTGCTTCTGCAGACGTGAGTCATCTGAACAAGTTACTCGAAAGGGTTGATGAAATGAACAATGATACACGGTTCAATAATGTACGCATCACAATTGAGGAATTCAAGAATTTTGCAGAACTGCGAAAAAAATTAGTACCACTTTCATTGGCTCTTTTCAGTTTTGCAAAAGTAAATGGCCTTTTAACAAGAAATGATTTTCATAGAGCTGCATCAAGTGTTTGCGGTTTATCTCTTTCCGACAATGTGGTTGAGATTGTTTTCCATCTGTTTGACACAAGTGGGGATGGAAATCTAAGTTCAAACGAGTTTGTTAGGGTGTTACACAGGCGAGAAAGAGATGTTGGTCGAACTGTGGAGACAGGAATCATGGGTTTCTTGTCATGCTGCTGGAATTGTACAGACACTTACCCGCGTTCACAGTTGCTTTCCTGA 1350 0.3993 MSLFSTLRRSSFIQRFRTSTTQSSSAPSLPNTNQPRYPKLVPAVVIGSALALLYYFSKINSHFDSAFLNNAFRKLSLPESTNNNLLFGDAYRSKVFFNYEKRIRLHSPPEKVFEYFASYREGEPLMTPADLMRAVVPVFPPSESNLVREGHLKGERSPGHLFCPPSDFFMLFDVNGDGLISFREYLFLVTLLSIPESSFSAVFKMFDMDNDGEIDKEEFKRVVTSMRSHSRHGVHRRDELLTDASIENGRMVEYLFGKDGKGRLKHDKFVKFISDLHDEILRLEFVHYDFKSRKTISAKDFAHSIVASADVSHLNKLLERVDEMNNDTRFNNVRITIEEFKNFAELRKKLVPLSLALFSFAKVNGLLTRNDFHRAASSVCGLSLSDNVVEIVFHLFDTSGDGNLSSNEFVRVLHRRERDVGRTVETGIMGFLSCCWNCTDTYPRSQLLS 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05155 449 SUPERFAMILY EF-hand 280 415 IPR011992 -
Trre5g05155 449 CDD EFh_MICU 199 416 - -
Trre5g05155 449 SMART efh_1 388 416 IPR002048 GO:0005509
Trre5g05155 449 SMART efh_1 164 192 IPR002048 GO:0005509
Trre5g05155 449 SMART efh_1 198 226 IPR002048 GO:0005509
Trre5g05155 449 Pfam EF hand 167 185 IPR002048 GO:0005509
Trre5g05155 449 Pfam EF hand 201 223 IPR002048 GO:0005509
Trre5g05155 449 SUPERFAMILY EF-hand 167 275 IPR011992 -
Trre5g05155 449 Gene3D - 285 426 - -
Trre5g05155 449 ProSiteProfiles EF-hand calcium-binding domain profile. 194 229 IPR002048 GO:0005509
Trre5g05155 449 ProSiteProfiles EF-hand calcium-binding domain profile. 384 419 IPR002048 GO:0005509
Trre5g05155 449 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 20 440 IPR039800 GO:0005509|GO:0006851
Trre5g05155 449 Gene3D - 107 274 - -
Trre5g05155 449 ProSitePatterns EF-hand calcium-binding domain. 397 409 IPR018247 -
Trre5g05155 449 Pfam EF-hand domain pair 365 415 IPR002048 GO:0005509
Trre5g05155 449 ProSitePatterns EF-hand calcium-binding domain. 207 219 IPR018247 -
Trre5g05155 449 CDD EFh 169 224 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05155 Trre-Chr5 52844539 52846982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05155 74 381 EF-hand Containing Proteins AT4G32060 65.287 2.38e-141 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05155 K22827 - gmx:100786375 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05155 5 52844539 52846982 Trre5g05155 5 52844539 52846982 ECH
Trre1g00672 1 5056543 5061395 Trre5g05155 5 52844539 52846982 PCT