Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00672 ATGTCTATCTTTTCCACCCTCAGAAAATCCATCTCACCCTTCACCCAACATTTTTCGATCCAACGGCTCCAAATCCTCCACCCTTCAACCTCGCCATCTTCGCCGTCGACACTGATCTCTCGGAACACTGTTCTCGCCACCATCGTCGCAGGCACGAGTCTAGGATTTCTTCTCTACACCACCGACTTTGATTCAACTCCTTTTCACTCCTCAATCTCTTCCTTCGTTGACCACTGGTCAACACCTAATTCTGAAGACCAAAATCAACATCGCTATTCACCTTCGTCATTCTTTTCCAAATTCTCTCTACCTGAAACTTCTAAAGCATATAGGAGAAAAGTTTTCTTCAACTATGAGAAGCGTATTCGGTTGCGAAGTCCTCCTGAAAAGGTTTTTGAATACTTTGCATCTTATCGATCACCAGAAGGAGAAGTACTCATGATACCTGCAGACCTAATGAGAGCTGTAGTTCCTGTTTTCCCTCCATCTGAATCTCACCTTGTTAGAGATGGATATTTGAGAGGAGAAAGAAGCCCTGGCCATTTACGCTGCTCTCCTTCAGAATTTTTTATGCTTTTTGATGTTAATAGTGACGGGCTTATATCTTTTAAAGAGTATATCTTTTTTGTAACACTACTCAGCATCCCTGAATCAAGCTTTTCCGTGGCATTTAAAATGTTTGACGTGGACAATAATGGGGAGATAACCAAGGAAGAATTCAAGAAAGTGATGGCATTGATGCGATCTCATCATCGACAAGGTGTTCAACACAGGGATGGACTGCGAATTGGTCTAAAGGTGAATGATTCTGTGGAAAATGGAGGGCTGTTGGAATACTTTTTTGGTAAAGATGGAAAAAGTTCCCTCCAACTTGATAAATTCGTACAATTTTTGCGAGACTTGAATGATGAAATTTTAAGGCTGGAGTTTGCTCATTATGATTACAAATCTCGAAAAACAATTTCAGCCAAGGACTTTGCTCTCTCCATGGTTGCTTCTGCCGACATGAGTCATCTAGGCAAATTGCTTGAACGGGTTGATGAATTGAATAACGATCCATGCTTTAAGGATGTGCGCATCACTTTTGAGGACTTCAAAAACTTTGCAGAGCTACGGAAAAAGCTATTGCCATTGTCATTAGCCCTTTTCAGTTTTGGAAAAGTAAACGGTCTGTTGACAAGAGATGATTTTCAGCGAGCAGCATCACATGTTTGCGGCATATCTCTCTCGGACAACGTGGTTGATATTGTTTATCATTTGTTTGATACAAATCAAGATGGAAACCTAAGTACAGATGAGTTTGTAAGAGTGCTACACAAGCGAGAAAGGGACAGCGGACATCCCGTGGAGACAGGAATGTTGGGTTTGTTGTCTTGCTGCTGGAACTGTAAAGAAAACATCTCATCTTCACGGTTGTTTTCCTCATAG 1428 0.4153 MSIFSTLRKSISPFTQHFSIQRLQILHPSTSPSSPSTLISRNTVLATIVAGTSLGFLLYTTDFDSTPFHSSISSFVDHWSTPNSEDQNQHRYSPSSFFSKFSLPETSKAYRRKVFFNYEKRIRLRSPPEKVFEYFASYRSPEGEVLMIPADLMRAVVPVFPPSESHLVRDGYLRGERSPGHLRCSPSEFFMLFDVNSDGLISFKEYIFFVTLLSIPESSFSVAFKMFDVDNNGEITKEEFKKVMALMRSHHRQGVQHRDGLRIGLKVNDSVENGGLLEYFFGKDGKSSLQLDKFVQFLRDLNDEILRLEFAHYDYKSRKTISAKDFALSMVASADMSHLGKLLERVDELNNDPCFKDVRITFEDFKNFAELRKKLLPLSLALFSFGKVNGLLTRDDFQRAASHVCGISLSDNVVDIVYHLFDTNQDGNLSTDEFVRVLHKRERDSGHPVETGMLGLLSCCWNCKENISSSRLFSS 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00672 475 ProSiteProfiles EF-hand calcium-binding domain profile. 409 444 IPR002048 GO:0005509
Trre1g00672 475 ProSitePatterns EF-hand calcium-binding domain. 422 434 IPR018247 -
Trre1g00672 475 Pfam EF hand 189 206 IPR002048 GO:0005509
Trre1g00672 475 SUPERFAMILY EF-hand 306 440 IPR011992 -
Trre1g00672 475 CDD EFh_MICU 220 441 - -
Trre1g00672 475 ProSiteProfiles EF-hand calcium-binding domain profile. 215 250 IPR002048 GO:0005509
Trre1g00672 475 SMART efh_1 185 213 IPR002048 GO:0005509
Trre1g00672 475 SMART efh_1 413 441 IPR002048 GO:0005509
Trre1g00672 475 SMART efh_1 219 247 IPR002048 GO:0005509
Trre1g00672 475 Pfam EF hand 223 246 IPR002048 GO:0005509
Trre1g00672 475 Pfam EF-hand domain pair 390 439 IPR002048 GO:0005509
Trre1g00672 475 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 40 466 IPR039800 GO:0005509|GO:0006851
Trre1g00672 475 SUPERFAMILY EF-hand 188 440 IPR011992 -
Trre1g00672 475 Gene3D - 164 252 - -
Trre1g00672 475 Gene3D - 306 447 - -
Trre1g00672 475 ProSitePatterns EF-hand calcium-binding domain. 228 240 IPR018247 -
Trre1g00672 475 CDD EFh 188 245 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00672 Trre-Chr1 5056543 5061395 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00672 45 406 EF-hand Containing Proteins AT4G32060 65.591 9.33e-168 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00672 K22827 - gmx:100806575 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00672 1 5056543 5061395 Trre5g05155 5 52844539 52846982 PCT