Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04959 ATGGTGGACTCTTACGCGCTCGGATTCATCATAACCTTCGTCATCACCTTCTTCTCACTCTACAATTTCCTCTTCTCTCGTAAGAATCGCTCTGAACCAACCACCACCGAGAACATTACAACCGCCACCGGAGAATGTAGATCTTTTAATCCTAACGGTGACGTTGATATCATCATTGTTGGTGCTGGTGTTGCTGGCTCCGCTCTCGCTTACACTCTCGGCAAGGATGGACGTCGAGTACTTGTTATTGAACGAGATTTGAATGAACCAGACCGAATTGTTGGAGAGTTGCTACAACCTGGAGGTTATCTCAAATTGATTGAGCTGGGACTTGAAGATTGTGTGGAGAAAATTGATGCTCAGCAAGTGTTTGGGTATGCTCTTTTCAAGGATGGGAAACACACACGACTCTCTTATCCCTTGGAAAAGTTTCACTCAGATATTGCTGGCAGAAGCTTTCACAATGGGCGTTTTATTCAGAGGATGAGAGAAAAGGCTTCCTCCCTTCCTAATGTACGATTAGAGCAAGGAACAGTCACTTCCCTGCTTGAAGAGCAAGGTATAATTAAAGGTGTACAGTACAAAATGAAAGATGCTAAGGAATTATCAGCATGTGCACCTCTTACCATTGTTTGTGATGGGTGTTTCTCCAACTTGCGCCGTTCTCTTTGTAATCCTAAGGTAGAGGTTCCCTCTTGTTTTGTTGGCTTAGTTTTGGAAAATTGTGAACTTCCATGTGCAAATCATGGTCACGTCATACTAGGAGATCCTTCACCGGTTCTGTTCTATCCCATAAGTAGTACAGAAGTTCGCTGTCTGGTTGATGTTCCTGGTCAGAAGGTTCCATCTATCTCCAATGGTGAAATGGCAATGTATTTGAAGACAGTAGTAGCTCCACAGGTTCCCCCTGAGATTCATGATGCTTTCATAGCTGCCGTGGACAAAGGTAACATAAGGACAATGCCTAACAGAAGCATGCCAGCCGCTCCTTATCCTACCCCGGGAGCCCTTTTGATGGGAGATGCATTCAACATGCGCCATCCCCTAACCGGTGGCGGGATGACTGTGGCATTATCTGATATAGTAGTGCTGCGAAATCTCCTCAAGCCTTTGCGTGACCTGAATGATGCACCTAGCCTTTGCAAATACCTTGAATCCTTCTATACCTTGCGTAAGCCAGTAGCATCCACCATAAATACGTTGGCAGGAGCACTCTACAAAGTTTTCTGTGCATCACCCGATCCAGCAAGGAAAGAAATGCGCCAAGCTTGCTTTGATTATCTGAGTCTTGGGGGTTTATTCTCAGAAGGACCAGTCTCTTTGCTTTCAGGATTAAATCCTCGCCCCCTGAGTTTGGTTCTTCATTTCTTTGCCGTCGCGATATATGGTGTTGGACGTTTATTGTTACCATTTCCTTCCCCTAAACGCATATGGATTGGAGTCCGATTAATTGCTAGTGCGTCAGGAATCATATTGCCCATAATTAAGGCAGAAGGAGTCCGTCAAATGTTCTTCCCTGCAACTGTTCCAGCTTATTACAGAACTCCTCCAGCTGCATAA 1560 0.4506 MVDSYALGFIITFVITFFSLYNFLFSRKNRSEPTTTENITTATGECRSFNPNGDVDIIIVGAGVAGSALAYTLGKDGRRVLVIERDLNEPDRIVGELLQPGGYLKLIELGLEDCVEKIDAQQVFGYALFKDGKHTRLSYPLEKFHSDIAGRSFHNGRFIQRMREKASSLPNVRLEQGTVTSLLEEQGIIKGVQYKMKDAKELSACAPLTIVCDGCFSNLRRSLCNPKVEVPSCFVGLVLENCELPCANHGHVILGDPSPVLFYPISSTEVRCLVDVPGQKVPSISNGEMAMYLKTVVAPQVPPEIHDAFIAAVDKGNIRTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLRDLNDAPSLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRIWIGVRLIASASGIILPIIKAEGVRQMFFPATVPAYYRTPPAA 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04959 519 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 205 220 - -
Trre5g04959 519 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 56 78 - -
Trre5g04959 519 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 333 348 - -
Trre5g04959 519 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 348 364 - -
Trre5g04959 519 FunFam Squalene monooxygenase 2 49 429 - -
Trre5g04959 519 PANTHER SQUALENE MONOOXYGENASE 16 517 IPR040125 GO:0004506|GO:0016126
Trre5g04959 519 Pfam NAD(P)-binding Rossmann-like domain 59 85 - -
Trre5g04959 519 Pfam Squalene epoxidase 206 478 IPR013698 GO:0004506|GO:0016020|GO:0050660
Trre5g04959 519 SUPERFAMILY FAD/NAD(P)-binding domain 54 430 IPR036188 -
Trre5g04959 519 Gene3D - 48 426 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04959 Trre-Chr5 51288884 51294017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04959 17 517 Miscellaneous Gene Families AT1G58440 77.535 0.0 812
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04959 K00511 - gmx:100820031 929.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04959 5 51288884 51294017 Trre5g04959 5 51288884 51294017 ECH
Trre1g00450 1 3347804 3351635 Trre5g04959 5 51288884 51294017 PCT