Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g00450 ATGGATCTGTATTTACTCGGTTGGATTTTAAGCTCCATTTTGTGTCTGTTTGCGTTATACAGTTTGATTTACGATGGGAAGAGAAATTGTGATGTGACGGAGAAGGTGAATCAGCGTGTGGATAGCGTGAACAGTACTGATGCTGGAGAAATCAAATCGGAGAAACTTAACGGTGACGCTGATGTTATAATTGTTGGAGCTGGTGTTGCTGGTGCTGCTTTAGCTTATACTCTCGGAAAGGATGGACGTCGAGTGCATGTTATTGAAAGAGATCTGAGTGAGCCTGACAGAATTGTTGGAGAGTTGCTACAACCTGGCGGCTATCTCAAATTAGTTGAACTCGGGCTTGAAGATTGTGTCAACAATATTGATGCTCAGAAAGTGTTTGGTTATGCTCTTTTCAAGGATGGAAAACATACTCGTCTCTCTTATCCCTTGGAAAAGTTTCACTCGGATGTCTCTGGCAGAAGCTTTCACAATGGCCGTTTTATTCAGAGGATGCGAGAGAAGGCTGCATCCCTTTCCAATGTAAATTTGGAGCAAGGATCAGTCATCTCCCTACTTGAAGAGAAGGGGACAATCAAAGGTGTGCAATACAAGAATAAAGATGGTCAGGAATTGACAGCATATGCTCCTCTTACGATTGTTTGTGATGGCTGTTTCTCAAACTTGCGTCGTTCTCTTTGCAACCCTAAGGTAGATAATCCCTCTTGTTTTGTTGGCTTAATTTTAGAGAACTGTGAACTTCCATGTGCCAATCACGGCCACGTCATACTTGGAGATCCTTCGCCAATTCTTTTCTATCCTATAAGTAGTTCAGAGATTCGATGTCTGGTTGATGTACCTGGTCAGAAGGTTCCCTCTATTTCAAATGGTGATATGACAAAGTATCTAAAGACAACAGTTGCTCCGCAGGTCCCACCTGAGCTTTATGATGCTTTCATAGCTGCTGTGGACAAAGGCAACATAAGGACAATGCCGAACAGAAGTATGCCAGCAGATCCTCGTCCTACTCCTGGAGCGGTACTGATGGGAGATGCATTCAACATGCGTCATCCACTAACAGGGGGAGGAATGACTGTAGCATTGTCTGATATTGTGGTGTTGAGAAATCTTCTCAAACCTTTGCGTGACCTGAATGATGCAACCACACTTTGCAAATACCTCGAGTCCTTTTATACATTGCGTAAGCCTGTGGCATCCACCATAAATACATTGGCAGGAGCCCTTTACAAGGTTTTTAGTGCATCCCCTGATCAAGCAAGGAAGGAAATGCGCCAAGCTTGCTTTGATTATCTAAGTCTTGGTGGCCTTTTCTCGGAAGGACCGATCTCTTTACTTTCAGGATTAAACCCTCGACCCTTAAGCTTGGTTCTCCATTTCTTTGCTGTTGCAGTATTTGGTGTCGGCCGTTTACTATTGCCATTTCCTTCACCCAAGCGGATGTGGATCGGAGCTCGATTACTCTCTGGTGCATCTGGAATCATCTTGCCCATAATTAAGGCCGAAGGAATTCGGCAGATGTTTTTCCCTGCCATGGTTCCAGCTTATTATAGAACTCCCCCGGCTTTACAAGAGTGA 1581 0.4415 MDLYLLGWILSSILCLFALYSLIYDGKRNCDVTEKVNQRVDSVNSTDAGEIKSEKLNGDADVIIVGAGVAGAALAYTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLVELGLEDCVNNIDAQKVFGYALFKDGKHTRLSYPLEKFHSDVSGRSFHNGRFIQRMREKAASLSNVNLEQGSVISLLEEKGTIKGVQYKNKDGQELTAYAPLTIVCDGCFSNLRRSLCNPKVDNPSCFVGLILENCELPCANHGHVILGDPSPILFYPISSSEIRCLVDVPGQKVPSISNGDMTKYLKTTVAPQVPPELYDAFIAAVDKGNIRTMPNRSMPADPRPTPGAVLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLRDLNDATTLCKYLESFYTLRKPVASTINTLAGALYKVFSASPDQARKEMRQACFDYLSLGGLFSEGPISLLSGLNPRPLSLVLHFFAVAVFGVGRLLLPFPSPKRMWIGARLLSGASGIILPIIKAEGIRQMFFPAMVPAYYRTPPALQE 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g00450 526 Pfam NAD(P)-binding Rossmann-like domain 64 90 - -
Trre1g00450 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 61 83 - -
Trre1g00450 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 353 369 - -
Trre1g00450 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 210 225 - -
Trre1g00450 526 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 338 353 - -
Trre1g00450 526 SUPERFAMILY FAD/NAD(P)-binding domain 60 434 IPR036188 -
Trre1g00450 526 Pfam Squalene epoxidase 211 483 IPR013698 GO:0004506|GO:0016020|GO:0050660
Trre1g00450 526 Gene3D - 48 415 IPR036188 -
Trre1g00450 526 PANTHER SQUALENE MONOOXYGENASE 22 522 IPR040125 GO:0004506|GO:0016126
Trre1g00450 526 FunFam Squalene monooxygenase 2 54 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g00450 Trre-Chr1 3347804 3351635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g00450 18 526 Miscellaneous Gene Families AT1G58440 75.734 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g00450 K00511 - gmx:100804406 902.894
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g00450 1 3347804 3351635 Trre1g00450 1 3347804 3351635 ECH
Trre1g00450 1 3347804 3351635 Trre5g04959 5 51288884 51294017 PCT