Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04753 ATGGCAGAAGAAGAAGAAGATAACGGAAGCACGAGCAGAGAAGAACAAGAAGAAGCATTAGTCGCTTTAATCGAACACCGCACCTACGAAGTTAACAATCTCCGTAAACGTATCGCCTATTACAAAAATCAGCTTGATGAAGCGGAAAAGAGGTTAAAAGATACAGAATCGAAATTGGCTCGTCTTCGTGGTCAAACTAATCCAGTTCAATCTACAACTCAAAATTTAACTAATTCTGATAATAATGATAATAATAATAATAATAATAATGGAATTCTAGCTGTGAAGACAGAGCGTAGATCAAATAGTCCTATTGATAGGAATGAACATTCTTACAAAAGTAATAATCAATCTAAACCTGCACTTGTTATTCCTGCTGTTACTCCTAAGATTTCGCGGCCTCCTGCTGCTGCCAGAGCTTCGTGTTCTGGAAGAGTCACTCCACCAGTTTCTTCTGGAAAATCTGATAAGCCTCGTCGAGAGCAACAAAATGATCAAGTTAAGGATAGACGGACGAAAAGAAAATTTGAACAGAAAGAACACCAGGAATTGATTCCTTTATTACGTACGAGTTCAACAGTGAAAATGGTACACTGCCAAGGAAGCAACCACATCTCAAGTCACCACAAGAGGAAAGTGCGGAGTATTGCTTTGTCTCCTGTGAATGATCAGATTTTTGCAACTAGTGCTTTGGACGGATTGGTCAACTTTTGGCAAGTCCAAGCTAGGGGATCAGGAGCCTCTCTGCTTAATTCTTCTGATTCTGCATCCCAAAACAAGAGATGGCCAGAAGATATAGCTTGGCATCCGGAAGGAAACCGGCTCTTTTCAGTATATACCGCTGATGGTGGAGACTCACAAGTATCAATTACAGATCTGAATAAACAAGGGGGAGCACGTGTGAGATATTTAGAGGACAAGCCCCATTTTAAGGGAATTATCAATGGCATTGATTTTATGCCCTGGGAAGATACATGCTTTGTAACTGGTGGAAGTGACCATGCTGTTATACTTTGGCGTGAACAAGATGGTGAGAACATATGGAAGCCAAGACCATTGCACAGAAATCTTCATTCTTCTGCTGTCATGGGTGTTGCTGGTATGCAGCAGAAACAGATTGTGTTATCTGCAGGTGCAGACAGGAGAATATTTGGATTTGATGTTGGTTTAGGAAGAGCAGATTTCAGTCATCAGATTGATAGTAAATGCATGAGTGTCCTTCCCAATCCGTGTGACTTCAACTTGTTTATGGTTCAAACAGGGACGCACGAGAAGCAGCTTCGACTATTTGATATTAGATTGAAGCGGACAGAACTTCATGCTTTTGGGTGGAAACAAGAAAGCAGTGATTCCCAATCAGCTTTGATAAATCAGGCTTGGTCTCCTGATGGTCTTTATATAACATCTGGTTCAACGGATCCTGTGATTCACATATTTGATATAAGATATAATGTTAACAGGCCTTCTCAATCTATAAGAGCTCATCAGAAACGAGTCTTCAGAGCCCTGTGGCTTCAGTCTCTTCCTCTTCTCATTTCCATATCATCTGATCTCAACATTGGGTTGCACACCCTGCAGAAGTAA 1584 0.4091 MAEEEEDNGSTSREEQEEALVALIEHRTYEVNNLRKRIAYYKNQLDEAEKRLKDTESKLARLRGQTNPVQSTTQNLTNSDNNDNNNNNNNGILAVKTERRSNSPIDRNEHSYKSNNQSKPALVIPAVTPKISRPPAAARASCSGRVTPPVSSGKSDKPRREQQNDQVKDRRTKRKFEQKEHQELIPLLRTSSTVKMVHCQGSNHISSHHKRKVRSIALSPVNDQIFATSALDGLVNFWQVQARGSGASLLNSSDSASQNKRWPEDIAWHPEGNRLFSVYTADGGDSQVSITDLNKQGGARVRYLEDKPHFKGIINGIDFMPWEDTCFVTGGSDHAVILWREQDGENIWKPRPLHRNLHSSAVMGVAGMQQKQIVLSAGADRRIFGFDVGLGRADFSHQIDSKCMSVLPNPCDFNLFMVQTGTHEKQLRLFDIRLKRTELHAFGWKQESSDSQSALINQAWSPDGLYITSGSTDPVIHIFDIRYNVNRPSQSIRAHQKRVFRALWLQSLPLLISISSDLNIGLHTLQK 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04753 527 Gene3D - 396 527 IPR015943 GO:0005515
Trre5g04753 527 MobiDBLite consensus disorder prediction 60 180 - -
Trre5g04753 527 SUPERFAMILY WD40 repeat-like 207 523 IPR036322 GO:0005515
Trre5g04753 527 MobiDBLite consensus disorder prediction 154 180 - -
Trre5g04753 527 Gene3D - 162 395 IPR015943 GO:0005515
Trre5g04753 527 MobiDBLite consensus disorder prediction 61 97 - -
Trre5g04753 527 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 4 525 - -
Trre5g04753 527 Coils Coil 31 65 - -
Trre5g04753 527 ProSiteProfiles Trp-Asp (WD) repeats profile. 206 241 IPR001680 GO:0005515
Trre5g04753 527 MobiDBLite consensus disorder prediction 108 122 - -
Trre5g04753 527 Pfam WD domain, G-beta repeat 457 480 IPR001680 GO:0005515
Trre5g04753 527 SMART WD40_4 297 340 IPR001680 GO:0005515
Trre5g04753 527 SMART WD40_4 443 480 IPR001680 GO:0005515
Trre5g04753 527 SMART WD40_4 485 524 IPR001680 GO:0005515
Trre5g04753 527 SMART WD40_4 349 387 IPR001680 GO:0005515
Trre5g04753 527 SMART WD40_4 200 239 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04753 Trre-Chr5 49368495 49373206 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04753 - - gmx:100799587 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04753 5 49368495 49373206 Trre5g04753 5 49368495 49373206 ECH
Trre7g05315 7 59368194 59371439 Trre5g04753 5 49368495 49373206 PCT